miRNA display CGI


Results 1 - 20 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 35294 0.75 0.636411
Target:  5'- aCUGCGCAGccccGCCGAGcgGCGCGCGCu- -3'
miRNA:   3'- -GGCGCGUCuu--UGGUUC--UGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 96903 0.77 0.522675
Target:  5'- cUCGCGCGGGAcuggcgGCCGcguAGAgGCGCGCGGc -3'
miRNA:   3'- -GGCGCGUCUU------UGGU---UCUgUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 118468 0.77 0.522675
Target:  5'- cCCGCGCA---GCCAAGGC-UGCGCGAc -3'
miRNA:   3'- -GGCGCGUcuuUGGUUCUGuGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 118247 0.77 0.522675
Target:  5'- cCCGCGC-GAGACCGGcGACGCA-GCGGu -3'
miRNA:   3'- -GGCGCGuCUUUGGUU-CUGUGUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 108029 0.77 0.532768
Target:  5'- cUCGcCGCGGcgGCCGgcgGGGCGCGCGCGGc -3'
miRNA:   3'- -GGC-GCGUCuuUGGU---UCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 125234 0.76 0.563436
Target:  5'- uCCGCggggGCGGGGcCCGAGAC-CACGCGGu -3'
miRNA:   3'- -GGCG----CGUCUUuGGUUCUGuGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 112307 0.75 0.604995
Target:  5'- aCCGCGCcGGugGACCAGGGCgACAuUGCGAg -3'
miRNA:   3'- -GGCGCGuCU--UUGGUUCUG-UGU-GCGCU- -5'
6500 3' -52.4 NC_001847.1 + 32211 0.75 0.615457
Target:  5'- aCCGCgGCcuuGGAcGCCGuccAGGCGCACGCGGc -3'
miRNA:   3'- -GGCG-CG---UCUuUGGU---UCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 119269 0.75 0.625931
Target:  5'- cCCGCGCGGcucgucgaGGGCCAGuaccGACGCGCGCu- -3'
miRNA:   3'- -GGCGCGUC--------UUUGGUU----CUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 61592 0.77 0.512657
Target:  5'- aCCGCGCAcucaaAGGCCGAG-UACGCGCGGu -3'
miRNA:   3'- -GGCGCGUc----UUUGGUUCuGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 2583 0.77 0.502719
Target:  5'- cCUGCGCGGccGCCGcGGcCGCACGCGAg -3'
miRNA:   3'- -GGCGCGUCuuUGGUuCU-GUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 102795 0.77 0.501729
Target:  5'- cCCGCGCGGggGCUggGcccccuccgcgccGCGCcGCGCGGg -3'
miRNA:   3'- -GGCGCGUCuuUGGuuC-------------UGUG-UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 104330 0.81 0.318919
Target:  5'- gCGCGUAGGcGGCCucGGCGCGCGCGAa -3'
miRNA:   3'- gGCGCGUCU-UUGGuuCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 32839 0.81 0.341862
Target:  5'- cCCGCGUGGccGCCGAGACcgcggcgcucGCGCGCGAg -3'
miRNA:   3'- -GGCGCGUCuuUGGUUCUG----------UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 35959 0.8 0.391234
Target:  5'- cUCGCGCgAGGAccacgagggcGCCAAGGCGCGCGCa- -3'
miRNA:   3'- -GGCGCG-UCUU----------UGGUUCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 74399 0.79 0.399903
Target:  5'- aCCGCGCGGccGCCGc-GCGCGCGCGGg -3'
miRNA:   3'- -GGCGCGUCuuUGGUucUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 29373 0.79 0.417604
Target:  5'- aCCGCGCGGcgGCCgGAGcugcCGCGCGCGAg -3'
miRNA:   3'- -GGCGCGUCuuUGG-UUCu---GUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 6087 0.79 0.445028
Target:  5'- gCGCGCucgcGGAGGCgCGAGACGCcCGCGAg -3'
miRNA:   3'- gGCGCG----UCUUUG-GUUCUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 48837 0.78 0.473432
Target:  5'- gCCGCGCGGGGgcGCCucGGC-CGCGCGGc -3'
miRNA:   3'- -GGCGCGUCUU--UGGuuCUGuGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 132282 0.78 0.473432
Target:  5'- cCCGCGCGucGGCCuGGGCGCugGCGc -3'
miRNA:   3'- -GGCGCGUcuUUGGuUCUGUGugCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.