miRNA display CGI


Results 21 - 40 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 44382 0.66 0.983193
Target:  5'- gCCGCGCAGGcguuCCGcGACGCG-GUGu -3'
miRNA:   3'- -GGCGCGUCUuu--GGUuCUGUGUgCGCu -5'
6500 3' -52.4 NC_001847.1 + 25103 0.66 0.983193
Target:  5'- aCCGCGguu-GAgCAAGAUuCGCGCGAc -3'
miRNA:   3'- -GGCGCgucuUUgGUUCUGuGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 25592 0.66 0.983193
Target:  5'- gUCGUcCAGAGGcacgcuCCGAGcACGCACGCGc -3'
miRNA:   3'- -GGCGcGUCUUU------GGUUC-UGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 80116 0.66 0.983193
Target:  5'- cCUGCGCAaacgcGCCc-GACGCGCGCa- -3'
miRNA:   3'- -GGCGCGUcuu--UGGuuCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 72587 0.66 0.983193
Target:  5'- aUGCGCGGGcugGGCCAAaACGCGCuGCu- -3'
miRNA:   3'- gGCGCGUCU---UUGGUUcUGUGUG-CGcu -5'
6500 3' -52.4 NC_001847.1 + 85205 0.66 0.983193
Target:  5'- aCCGCGCGccacGGcguCCAAcguGCGCACGCGc -3'
miRNA:   3'- -GGCGCGU----CUuu-GGUUc--UGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 40949 0.66 0.983193
Target:  5'- gCGCGCAGc-GCCucGAacugccCGCGCGAg -3'
miRNA:   3'- gGCGCGUCuuUGGuuCUgu----GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 30930 0.66 0.982997
Target:  5'- gUGCgGCGGAGGCCuucGcauaaacggcgcuGCGCGCGCGGu -3'
miRNA:   3'- gGCG-CGUCUUUGGuu-C-------------UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 46945 0.66 0.982997
Target:  5'- gCCGCGUgcggcgaagccaAGGAGCCGgccccacuuugggAGGCGCAgGCu- -3'
miRNA:   3'- -GGCGCG------------UCUUUGGU-------------UCUGUGUgCGcu -5'
6500 3' -52.4 NC_001847.1 + 90202 0.66 0.982997
Target:  5'- cCCGaGCAGu--CCAGGucucgguaaaacaGCACGCGCGc -3'
miRNA:   3'- -GGCgCGUCuuuGGUUC-------------UGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 92846 0.66 0.982997
Target:  5'- gCCGcCGUAGAAAUUugguucgAGGACGuggcgcCGCGCGAg -3'
miRNA:   3'- -GGC-GCGUCUUUGG-------UUCUGU------GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 29623 0.66 0.982997
Target:  5'- -gGUGgAGGAcaugaggGCCGGGGCGC-CGCGGg -3'
miRNA:   3'- ggCGCgUCUU-------UGGUUCUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 132436 0.66 0.982997
Target:  5'- -gGUGgAGGAcaugaggGCCGGGGCGC-CGCGGg -3'
miRNA:   3'- ggCGCgUCUU-------UGGUUCUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 126888 0.66 0.982599
Target:  5'- gUCaCGCAGGAACCGcucguugcugccgcAGGCcaGCGCGUGGc -3'
miRNA:   3'- -GGcGCGUCUUUGGU--------------UCUG--UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 48431 0.66 0.982599
Target:  5'- gCCGCGUGGAGuugagcaccagcACCGagggcgugaaggugAGGCaaaaGCGCGCGGc -3'
miRNA:   3'- -GGCGCGUCUU------------UGGU--------------UCUG----UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 73523 0.66 0.981988
Target:  5'- aCCGCuGCAuGAGCCGgcugauugcggagguGGGCGCGgGCGu -3'
miRNA:   3'- -GGCG-CGUcUUUGGU---------------UCUGUGUgCGCu -5'
6500 3' -52.4 NC_001847.1 + 3910 0.66 0.981988
Target:  5'- gCCaGCGCGGgcGCCGGuugcgcgcccgcgcuGGCGC-CGCGGc -3'
miRNA:   3'- -GG-CGCGUCuuUGGUU---------------CUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 124020 0.66 0.981988
Target:  5'- gCCGCGUccaAGAAGCCGuccuccagcgccacGACGC-CGUGGu -3'
miRNA:   3'- -GGCGCG---UCUUUGGUu-------------CUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 69660 0.66 0.98115
Target:  5'- aCCGCGCcauGGACCGccAGAgcgagccucCGCGCGCGc -3'
miRNA:   3'- -GGCGCGuc-UUUGGU--UCU---------GUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 10662 0.66 0.98115
Target:  5'- -aGCGCuuGGACUugaacGCGCACGCGAa -3'
miRNA:   3'- ggCGCGucUUUGGuuc--UGUGUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.