miRNA display CGI


Results 61 - 80 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 88465 0.66 0.957051
Target:  5'- cGaCCGCGCGCG-CGUg----CUgcUCGCc -3'
miRNA:   3'- aC-GGCGCGCGCcGCAaauaaGA--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 14458 0.66 0.964294
Target:  5'- gGCCGCGCugcuCGGCGUgcgcUCcaaCGCc -3'
miRNA:   3'- aCGGCGCGc---GCCGCAaauaAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 29533 0.66 0.959322
Target:  5'- cGCC-CGCGCGGCGcgggcgcucgaGUUCcccCGCa -3'
miRNA:   3'- aCGGcGCGCGCCGCaaa--------UAAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 81701 0.66 0.961149
Target:  5'- cGCUGCGCGCGcuGCGgcacgcg--CGCg -3'
miRNA:   3'- aCGGCGCGCGC--CGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 29979 0.66 0.962919
Target:  5'- cGCCGCcuucGCGCGGCugcagggCUaugUCGCc -3'
miRNA:   3'- aCGGCG----CGCGCCGcaaauaaGA---AGCG- -5'
6500 5' -53.3 NC_001847.1 + 97474 0.66 0.964294
Target:  5'- gGCCGCGCGCuaagcccGCGgg----CUUgCGCg -3'
miRNA:   3'- aCGGCGCGCGc------CGCaaauaaGAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 75785 0.66 0.961864
Target:  5'- gGCCGCgggcucgGCGCGGCGcgcgacc-UCGCc -3'
miRNA:   3'- aCGGCG-------CGCGCCGCaaauaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 104157 0.66 0.957051
Target:  5'- cGCCGCgcccuGCGCGGCca-UGUcCUUgCGCc -3'
miRNA:   3'- aCGGCG-----CGCGCCGcaaAUAaGAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 91638 0.66 0.964294
Target:  5'- gGCUGCGgcUGCGGCucuug--CUUCGCc -3'
miRNA:   3'- aCGGCGC--GCGCCGcaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 108048 0.66 0.964294
Target:  5'- gGgCGCGCGCGGCaaaggGUUUgccUGCg -3'
miRNA:   3'- aCgGCGCGCGCCGcaaa-UAAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 59312 0.66 0.948866
Target:  5'- gUGCCaGgGCGCGGCGccgg--CggCGCc -3'
miRNA:   3'- -ACGG-CgCGCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 4201 0.66 0.95184
Target:  5'- gGCCGCGCGCaGGCagccaaagccCUgCGCg -3'
miRNA:   3'- aCGGCGCGCG-CCGcaaauaa---GAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 79360 0.66 0.960788
Target:  5'- cUGCCGCGCGauGCGaagcUGUgcggCagCGCg -3'
miRNA:   3'- -ACGGCGCGCgcCGCaa--AUAa---GaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 77709 0.66 0.967575
Target:  5'- cGCgCGCGCGCuGGUGcgcg--CUUgGCg -3'
miRNA:   3'- aCG-GCGCGCG-CCGCaaauaaGAAgCG- -5'
6500 5' -53.3 NC_001847.1 + 122010 0.66 0.96789
Target:  5'- gGCCGCggcaggcgGCGCGGCGccgcccg--CGCg -3'
miRNA:   3'- aCGGCG--------CGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 8780 0.66 0.967575
Target:  5'- cGCCGgGCGCGGCcgc----CUUCa- -3'
miRNA:   3'- aCGGCgCGCGCCGcaaauaaGAAGcg -5'
6500 5' -53.3 NC_001847.1 + 65774 0.66 0.957051
Target:  5'- aGCUGCGCGCcGUGUacgcUUUUUCGg -3'
miRNA:   3'- aCGGCGCGCGcCGCAaau-AAGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 80685 0.66 0.960788
Target:  5'- gGCUGCGCGCcGGCGgcgg--CUgcgGCu -3'
miRNA:   3'- aCGGCGCGCG-CCGCaaauaaGAag-CG- -5'
6500 5' -53.3 NC_001847.1 + 30198 0.66 0.953079
Target:  5'- cGCgGUGCGCGGCGcg-------CGCg -3'
miRNA:   3'- aCGgCGCGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 79074 0.66 0.957051
Target:  5'- aGCCGgGCGCGuGCGacgUGUgccCgugCGCc -3'
miRNA:   3'- aCGGCgCGCGC-CGCaa-AUAa--Gaa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.