Results 61 - 80 of 533 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 88465 | 0.66 | 0.957051 |
Target: 5'- cGaCCGCGCGCG-CGUg----CUgcUCGCc -3' miRNA: 3'- aC-GGCGCGCGCcGCAaauaaGA--AGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 14458 | 0.66 | 0.964294 |
Target: 5'- gGCCGCGCugcuCGGCGUgcgcUCcaaCGCc -3' miRNA: 3'- aCGGCGCGc---GCCGCAaauaAGaa-GCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 29533 | 0.66 | 0.959322 |
Target: 5'- cGCC-CGCGCGGCGcgggcgcucgaGUUCcccCGCa -3' miRNA: 3'- aCGGcGCGCGCCGCaaa--------UAAGaa-GCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 81701 | 0.66 | 0.961149 |
Target: 5'- cGCUGCGCGCGcuGCGgcacgcg--CGCg -3' miRNA: 3'- aCGGCGCGCGC--CGCaaauaagaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 29979 | 0.66 | 0.962919 |
Target: 5'- cGCCGCcuucGCGCGGCugcagggCUaugUCGCc -3' miRNA: 3'- aCGGCG----CGCGCCGcaaauaaGA---AGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 97474 | 0.66 | 0.964294 |
Target: 5'- gGCCGCGCGCuaagcccGCGgg----CUUgCGCg -3' miRNA: 3'- aCGGCGCGCGc------CGCaaauaaGAA-GCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 75785 | 0.66 | 0.961864 |
Target: 5'- gGCCGCgggcucgGCGCGGCGcgcgacc-UCGCc -3' miRNA: 3'- aCGGCG-------CGCGCCGCaaauaagaAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 104157 | 0.66 | 0.957051 |
Target: 5'- cGCCGCgcccuGCGCGGCca-UGUcCUUgCGCc -3' miRNA: 3'- aCGGCG-----CGCGCCGcaaAUAaGAA-GCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 91638 | 0.66 | 0.964294 |
Target: 5'- gGCUGCGgcUGCGGCucuug--CUUCGCc -3' miRNA: 3'- aCGGCGC--GCGCCGcaaauaaGAAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 108048 | 0.66 | 0.964294 |
Target: 5'- gGgCGCGCGCGGCaaaggGUUUgccUGCg -3' miRNA: 3'- aCgGCGCGCGCCGcaaa-UAAGaa-GCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 59312 | 0.66 | 0.948866 |
Target: 5'- gUGCCaGgGCGCGGCGccgg--CggCGCc -3' miRNA: 3'- -ACGG-CgCGCGCCGCaaauaaGaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 4201 | 0.66 | 0.95184 |
Target: 5'- gGCCGCGCGCaGGCagccaaagccCUgCGCg -3' miRNA: 3'- aCGGCGCGCG-CCGcaaauaa---GAaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 79360 | 0.66 | 0.960788 |
Target: 5'- cUGCCGCGCGauGCGaagcUGUgcggCagCGCg -3' miRNA: 3'- -ACGGCGCGCgcCGCaa--AUAa---GaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 77709 | 0.66 | 0.967575 |
Target: 5'- cGCgCGCGCGCuGGUGcgcg--CUUgGCg -3' miRNA: 3'- aCG-GCGCGCG-CCGCaaauaaGAAgCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 122010 | 0.66 | 0.96789 |
Target: 5'- gGCCGCggcaggcgGCGCGGCGccgcccg--CGCg -3' miRNA: 3'- aCGGCG--------CGCGCCGCaaauaagaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 8780 | 0.66 | 0.967575 |
Target: 5'- cGCCGgGCGCGGCcgc----CUUCa- -3' miRNA: 3'- aCGGCgCGCGCCGcaaauaaGAAGcg -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 65774 | 0.66 | 0.957051 |
Target: 5'- aGCUGCGCGCcGUGUacgcUUUUUCGg -3' miRNA: 3'- aCGGCGCGCGcCGCAaau-AAGAAGCg -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 80685 | 0.66 | 0.960788 |
Target: 5'- gGCUGCGCGCcGGCGgcgg--CUgcgGCu -3' miRNA: 3'- aCGGCGCGCG-CCGCaaauaaGAag-CG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 30198 | 0.66 | 0.953079 |
Target: 5'- cGCgGUGCGCGGCGcg-------CGCg -3' miRNA: 3'- aCGgCGCGCGCCGCaaauaagaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 79074 | 0.66 | 0.957051 |
Target: 5'- aGCCGgGCGCGuGCGacgUGUgccCgugCGCc -3' miRNA: 3'- aCGGCgCGCGC-CGCaa-AUAa--Gaa-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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