miRNA display CGI


Results 81 - 100 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 104211 0.66 0.956665
Target:  5'- cUGCCGguacuCGCGCGGCGgcacgggcacCGCg -3'
miRNA:   3'- -ACGGC-----GCGCGCCGCaaauaagaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 67206 0.66 0.955491
Target:  5'- cGCCGUGCcgaGCGGCGggcgcgcggUCgaaCGCc -3'
miRNA:   3'- aCGGCGCG---CGCCGCaaaua----AGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 28236 0.66 0.953079
Target:  5'- aUGCaGCGCGUGGUGguggagUGggCcUCGCu -3'
miRNA:   3'- -ACGgCGCGCGCCGCaa----AUaaGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 132186 0.66 0.948866
Target:  5'- cGCUGCGCGCcgaGGCGgccg--CcgCGCu -3'
miRNA:   3'- aCGGCGCGCG---CCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 104157 0.66 0.957051
Target:  5'- cGCCGCgcccuGCGCGGCca-UGUcCUUgCGCc -3'
miRNA:   3'- aCGGCG-----CGCGCCGcaaAUAaGAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 94172 0.66 0.957051
Target:  5'- cUGCUGgGCGCGGCcg-----CcUCGCg -3'
miRNA:   3'- -ACGGCgCGCGCCGcaaauaaGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 88465 0.66 0.957051
Target:  5'- cGaCCGCGCGCG-CGUg----CUgcUCGCc -3'
miRNA:   3'- aC-GGCGCGCGCcGCAaauaaGA--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 36447 0.66 0.953079
Target:  5'- cGgCGCGCGCGGCGcgg---CUgugugaGCg -3'
miRNA:   3'- aCgGCGCGCGCCGCaaauaaGAag----CG- -5'
6500 5' -53.3 NC_001847.1 + 55165 0.66 0.953079
Target:  5'- cGCCGCGCaGCGGC---------UCGCc -3'
miRNA:   3'- aCGGCGCG-CGCCGcaaauaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 133391 0.66 0.948866
Target:  5'- -uCCGCgGCGCGGUGgagUAccUCUgcgCGCg -3'
miRNA:   3'- acGGCG-CGCGCCGCaa-AUa-AGAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 4289 0.66 0.960788
Target:  5'- aGgCGCGCGcCGGCGccUUGguacUCGCg -3'
miRNA:   3'- aCgGCGCGC-GCCGCa-AAUaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 112889 0.66 0.957051
Target:  5'- cGCCGCGCGCu-CGUcgGcUUCUUCcuGCu -3'
miRNA:   3'- aCGGCGCGCGccGCAaaU-AAGAAG--CG- -5'
6500 5' -53.3 NC_001847.1 + 119912 0.66 0.953079
Target:  5'- cGCCGcCGC-CGGCGcgUA--CUUCGUc -3'
miRNA:   3'- aCGGC-GCGcGCCGCaaAUaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 91686 0.66 0.948866
Target:  5'- gGCUGCGgcUGCGGCucccg--CUUCGCu -3'
miRNA:   3'- aCGGCGC--GCGCCGcaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 4201 0.66 0.95184
Target:  5'- gGCCGCGCGCaGGCagccaaagccCUgCGCg -3'
miRNA:   3'- aCGGCGCGCG-CCGcaaauaa---GAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 75866 0.66 0.953079
Target:  5'- gUGuuGCGCGCGGCGg--------CGUc -3'
miRNA:   3'- -ACggCGCGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 68480 0.66 0.952255
Target:  5'- cGCCGCGCG-GGCGcaag-----CGCg -3'
miRNA:   3'- aCGGCGCGCgCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 131426 0.66 0.951002
Target:  5'- gGCCGCGCGCuacgcGGCGgccgcggggccCGCg -3'
miRNA:   3'- aCGGCGCGCG-----CCGCaaauaagaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 105966 0.66 0.948866
Target:  5'- cGCCgGCgGCGCGGCGggccgcCUccagcgccUCGCg -3'
miRNA:   3'- aCGG-CG-CGCGCCGCaaauaaGA--------AGCG- -5'
6500 5' -53.3 NC_001847.1 + 72953 0.66 0.960788
Target:  5'- aGCCGCaCGCGcGCGUggaccUCggCGUg -3'
miRNA:   3'- aCGGCGcGCGC-CGCAaaua-AGaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.