miRNA display CGI


Results 121 - 140 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 12924 0.66 0.964294
Target:  5'- cGCCGCGgggGCGcGCGUg---UCgUCGUg -3'
miRNA:   3'- aCGGCGCg--CGC-CGCAaauaAGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 75277 0.66 0.959322
Target:  5'- gGCCGCGCGC-GCGgcccucggCgacCGCg -3'
miRNA:   3'- aCGGCGCGCGcCGCaaauaa--Gaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 123828 0.66 0.953079
Target:  5'- aGCCGCcCGCcggccucggcgGGCGcgcccaUCUUCGCg -3'
miRNA:   3'- aCGGCGcGCG-----------CCGCaaaua-AGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 14338 0.66 0.953079
Target:  5'- gGCCGgGCGUGGUGg-----CggCGCc -3'
miRNA:   3'- aCGGCgCGCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 82075 0.66 0.964294
Target:  5'- aGCCGgGCuCGGCGUcUGggCcaagCGCg -3'
miRNA:   3'- aCGGCgCGcGCCGCAaAUaaGaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 33333 0.66 0.957051
Target:  5'- gGCgGCGCGCuGCGUgacggUGggCcccUCGCa -3'
miRNA:   3'- aCGgCGCGCGcCGCAa----AUaaGa--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 38977 0.66 0.957051
Target:  5'- gGCCGCgGCGgGGCuuaguagacgauGUggacGUUCUcgUCGCg -3'
miRNA:   3'- aCGGCG-CGCgCCG------------CAaa--UAAGA--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 73820 0.66 0.957051
Target:  5'- cGCCGCGCuGCaGCGg-----CUgCGCg -3'
miRNA:   3'- aCGGCGCG-CGcCGCaaauaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 54577 0.66 0.948866
Target:  5'- gUGaCGCGCGCGaGCGa-UGUUCgggggCGCc -3'
miRNA:   3'- -ACgGCGCGCGC-CGCaaAUAAGaa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 91816 0.66 0.954696
Target:  5'- cGCCGCGCGgcgauggcagcaCGGCagcgcgcgCUUCGUa -3'
miRNA:   3'- aCGGCGCGC------------GCCGcaaauaa-GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 69750 0.66 0.955885
Target:  5'- aGCCucccgGUGCGCGGCGgucaagug-CGCg -3'
miRNA:   3'- aCGG-----CGCGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 10076 0.66 0.957051
Target:  5'- cGCCGCGCGCu-CGUcgGcUUCUUCcuGCu -3'
miRNA:   3'- aCGGCGCGCGccGCAaaU-AAGAAG--CG- -5'
6500 5' -53.3 NC_001847.1 + 59524 0.66 0.957051
Target:  5'- cGCCGuCGUGgGGCGg-----CaUCGCg -3'
miRNA:   3'- aCGGC-GCGCgCCGCaaauaaGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 99107 0.66 0.964294
Target:  5'- aGCCGCGCGUaGUGcucg-UCcgCGCg -3'
miRNA:   3'- aCGGCGCGCGcCGCaaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 99211 0.66 0.953079
Target:  5'- gGCCGCGCGgCGGCGcgc------CGCc -3'
miRNA:   3'- aCGGCGCGC-GCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 122700 0.66 0.953079
Target:  5'- cGCCGCGCGCGcUGUgc---CggCGCc -3'
miRNA:   3'- aCGGCGCGCGCcGCAaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 76490 0.66 0.952668
Target:  5'- cGCCGCaaGCGUgcgacccGGCGgaaa-UCUUCGUg -3'
miRNA:   3'- aCGGCG--CGCG-------CCGCaaauaAGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 59812 0.66 0.95058
Target:  5'- cUGCCGCccgcccgggaGCGCGGUGgccuaccccuuUUUUUUGCu -3'
miRNA:   3'- -ACGGCG----------CGCGCCGCaaau-------AAGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 107109 0.66 0.95058
Target:  5'- cGCCGCGUcUGGCGUgugcagg-CGCu -3'
miRNA:   3'- aCGGCGCGcGCCGCAaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 11576 0.66 0.960788
Target:  5'- gGCUGC-CGCGGUGccggUUGcUUCUgCGCu -3'
miRNA:   3'- aCGGCGcGCGCCGCa---AAU-AAGAaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.