miRNA display CGI


Results 141 - 160 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 48835 0.67 0.92955
Target:  5'- uUGCCGCGCgGgGGCGccucggCcgCGCg -3'
miRNA:   3'- -ACGGCGCG-CgCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 57197 0.67 0.924097
Target:  5'- aUGCgCGCGCccgGCGGCGUUUGcuacagcCGCc -3'
miRNA:   3'- -ACG-GCGCG---CGCCGCAAAUaagaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 4465 0.67 0.92955
Target:  5'- gGCCGCGCGguugaCGGCGgc----CUUgCGCu -3'
miRNA:   3'- aCGGCGCGC-----GCCGCaaauaaGAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 64459 0.67 0.924097
Target:  5'- cGCCGCcCGCGGCGg--------CGCg -3'
miRNA:   3'- aCGGCGcGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 48636 0.67 0.924097
Target:  5'- cGCCGCG-GCGGCGggg---CgcCGCc -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 1937 0.67 0.92955
Target:  5'- aGCCgGCGCGCGGCGcagagcUCcUCcaGCg -3'
miRNA:   3'- aCGG-CGCGCGCCGCaaaua-AGaAG--CG- -5'
6500 5' -53.3 NC_001847.1 + 33651 0.67 0.92955
Target:  5'- aGgCGCGCGCGcGCGUggccgCggcccgCGCg -3'
miRNA:   3'- aCgGCGCGCGC-CGCAaauaaGaa----GCG- -5'
6500 5' -53.3 NC_001847.1 + 104911 0.67 0.946221
Target:  5'- gGCC-CGCGCGGCGgcgggc---CGCg -3'
miRNA:   3'- aCGGcGCGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 74134 0.67 0.946221
Target:  5'- gUGCUGCGCGUGGCGccggggcgaaugAUggCggCGCc -3'
miRNA:   3'- -ACGGCGCGCGCCGCaaa---------UAa-GaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 81170 0.67 0.94532
Target:  5'- cGCCGCGCcgcucggagggcucGCGGCGgcgccagccggCGCg -3'
miRNA:   3'- aCGGCGCG--------------CGCCGCaaauaagaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 2537 0.67 0.944409
Target:  5'- gGCCGCGgGaccgcugcucucCGGCGggcugUCUUCGg -3'
miRNA:   3'- aCGGCGCgC------------GCCGCaaauaAGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 27766 0.67 0.943488
Target:  5'- gGCUGUGCGgGGCGUacaauaaaCUgCGCg -3'
miRNA:   3'- aCGGCGCGCgCCGCAaauaa---GAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 134236 0.67 0.939705
Target:  5'- cGCCgGCGgGCGGCGgccgg-CggcCGCg -3'
miRNA:   3'- aCGG-CGCgCGCCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 69490 0.67 0.940187
Target:  5'- gGCCGgGCugGCGGCGUacacggcggaucucgUUugugacgucaucggGUUUUUCGCg -3'
miRNA:   3'- aCGGCgCG--CGCCGCA---------------AA--------------UAAGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 18946 0.67 0.939705
Target:  5'- cGCCGC-CGCGGCGUccGggCggCGa -3'
miRNA:   3'- aCGGCGcGCGCCGCAaaUaaGaaGCg -5'
6500 5' -53.3 NC_001847.1 + 98198 0.67 0.934753
Target:  5'- aGCCGUGCGaCGGCcgcggagcuccgGgaaaGUUCUUCuGCa -3'
miRNA:   3'- aCGGCGCGC-GCCG------------Caaa-UAAGAAG-CG- -5'
6500 5' -53.3 NC_001847.1 + 87940 0.67 0.934753
Target:  5'- gGCCGCGCacGCGGUGagcgUGUUCaaaGUg -3'
miRNA:   3'- aCGGCGCG--CGCCGCaa--AUAAGaagCG- -5'
6500 5' -53.3 NC_001847.1 + 70526 0.67 0.934753
Target:  5'- gGCUGCuGgGCGGCGUg----CUggCGCu -3'
miRNA:   3'- aCGGCG-CgCGCCGCAaauaaGAa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 38207 0.67 0.934753
Target:  5'- cGCCGCuaGCGGCGacccg-CUauacgCGCa -3'
miRNA:   3'- aCGGCGcgCGCCGCaaauaaGAa----GCG- -5'
6500 5' -53.3 NC_001847.1 + 29924 0.67 0.934753
Target:  5'- gUGcCCGCGCGCccgcggugGGCGgUUGUgUCUUCuuaGCg -3'
miRNA:   3'- -AC-GGCGCGCG--------CCGCaAAUA-AGAAG---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.