miRNA display CGI


Results 121 - 140 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 105171 0.71 0.767264
Target:  5'- aGCCGCGCgaagGCGGCGUgcagGUacaugCU-CGCu -3'
miRNA:   3'- aCGGCGCG----CGCCGCAaa--UAa----GAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 14372 0.71 0.767264
Target:  5'- cGCCaGCGCGCGGuCGUagAggCU-CGCc -3'
miRNA:   3'- aCGG-CGCGCGCC-GCAaaUaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 66057 0.71 0.758509
Target:  5'- cGuCCGCGCGCGGCGccagacgcggCgagCGCg -3'
miRNA:   3'- aC-GGCGCGCGCCGCaaauaa----Gaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 116454 0.71 0.75753
Target:  5'- cGCUGgcgcaCGCGCGGCGcg-GUUCUgcucagcgUCGCg -3'
miRNA:   3'- aCGGC-----GCGCGCCGCaaaUAAGA--------AGCG- -5'
6500 5' -53.3 NC_001847.1 + 99690 0.7 0.818288
Target:  5'- uUGCgGCGCGCGGCGcgggccgccguaaagUCagCGCg -3'
miRNA:   3'- -ACGgCGCGCGCCGCaaaua----------AGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 40653 0.7 0.813849
Target:  5'- cGCCGCGCcucGCGGCcUUcUGUaCUUUGCc -3'
miRNA:   3'- aCGGCGCG---CGCCGcAA-AUAaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 59363 0.7 0.812956
Target:  5'- cGCCGCGCcgagcccGCGGCcg-UGUUCacccgCGCg -3'
miRNA:   3'- aCGGCGCG-------CGCCGcaaAUAAGaa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 109948 0.7 0.804842
Target:  5'- gGCCGCGCGCGGgGc-------UCGCu -3'
miRNA:   3'- aCGGCGCGCGCCgCaaauaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 62083 0.7 0.813849
Target:  5'- -uCCGCGCccGCGGCGcguug-CUUCGCc -3'
miRNA:   3'- acGGCGCG--CGCCGCaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 35942 0.7 0.839796
Target:  5'- cGCCGcCGCGCGGCcg-----CcUCGCg -3'
miRNA:   3'- aCGGC-GCGCGCCGcaaauaaGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 101462 0.7 0.817404
Target:  5'- cUGCCGcCGCGCGGCcgcaagggCggCGCg -3'
miRNA:   3'- -ACGGC-GCGCGCCGcaaauaa-GaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 1161 0.7 0.822683
Target:  5'- aUGCCGCGCGCgcucccagccccGGCGccUUAU-CU-CGCu -3'
miRNA:   3'- -ACGGCGCGCG------------CCGCa-AAUAaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 7898 0.7 0.822683
Target:  5'- aGCCGCGCGgGGCGcgcgg-CggcCGCc -3'
miRNA:   3'- aCGGCGCGCgCCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 62561 0.7 0.804842
Target:  5'- cUGCCGC-CGCGGCcgcgGUUgcucggCUUUGCg -3'
miRNA:   3'- -ACGGCGcGCGCCG----CAAauaa--GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 36344 0.7 0.804842
Target:  5'- gUGCCGCGCGCcGCGg-----CgcgCGCa -3'
miRNA:   3'- -ACGGCGCGCGcCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 33580 0.7 0.801193
Target:  5'- gGCCGUGCGCGGUGccgacgacgUCcugCGCc -3'
miRNA:   3'- aCGGCGCGCGCCGCaaaua----AGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 41033 0.7 0.831334
Target:  5'- gGgCGCGcCGCGGCGUUUAgcacaUGCa -3'
miRNA:   3'- aCgGCGC-GCGCCGCAAAUaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 65918 0.7 0.831334
Target:  5'- cGCCGU-CGCGGCGUcggcGUUCccCGCg -3'
miRNA:   3'- aCGGCGcGCGCCGCAaa--UAAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 74409 0.7 0.831334
Target:  5'- cGCCGCGCGCGcGCGggccgcCgaCGUa -3'
miRNA:   3'- aCGGCGCGCGC-CGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 133550 0.7 0.839796
Target:  5'- cGCCGCGCGCuGGCccgag--CggCGCg -3'
miRNA:   3'- aCGGCGCGCG-CCGcaaauaaGaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.