miRNA display CGI


Results 81 - 100 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 31154 0.72 0.707312
Target:  5'- gGCCGCG-GCGGUGgcc-UUCUgCGCg -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauAAGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 114147 0.72 0.71651
Target:  5'- aGCCGCGCGCGGUGccgAUUgggaggcCUagugCGCg -3'
miRNA:   3'- aCGGCGCGCGCCGCaaaUAA-------GAa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 52605 0.72 0.717529
Target:  5'- aGcCCGCGgGCGGCGccUUUGacUUCggCGCg -3'
miRNA:   3'- aC-GGCGCgCGCCGC--AAAU--AAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 92480 0.72 0.717529
Target:  5'- gGCCaGCGCgGCGGCGgcc--UCUUCGa -3'
miRNA:   3'- aCGG-CGCG-CGCCGCaaauaAGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 54332 0.72 0.726659
Target:  5'- cGCgGCGCGCGGC-------CUUCGCc -3'
miRNA:   3'- aCGgCGCGCGCCGcaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 50066 0.72 0.726659
Target:  5'- gGuCCGCGCGCGGCGcggacccgggCGCg -3'
miRNA:   3'- aC-GGCGCGCGCCGCaaauaagaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 126918 0.72 0.727669
Target:  5'- gGCCaGCGCGUGGCGcagcugCUUCuGCu -3'
miRNA:   3'- aCGG-CGCGCGCCGCaaauaaGAAG-CG- -5'
6500 5' -53.3 NC_001847.1 + 100757 0.72 0.727669
Target:  5'- cUGCCGCG-GCGGCGgccgccgUUGUUUcggcCGCa -3'
miRNA:   3'- -ACGGCGCgCGCCGCa------AAUAAGaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 104417 0.72 0.727669
Target:  5'- gGCCaGCGCGCGGCGcacug-CgcCGCg -3'
miRNA:   3'- aCGG-CGCGCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 1604 0.72 0.727669
Target:  5'- gGCCaGCGCGCGGCGcacug-CgcCGCg -3'
miRNA:   3'- aCGG-CGCGCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 100367 0.72 0.727669
Target:  5'- aGCCGCGCGCcGCGgccg--CggCGCg -3'
miRNA:   3'- aCGGCGCGCGcCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 38113 0.72 0.731701
Target:  5'- cGCCGCuGCcCGGCGggUGcgccgggcaccgagUCUUCGCg -3'
miRNA:   3'- aCGGCG-CGcGCCGCaaAUa-------------AGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 94363 0.72 0.737722
Target:  5'- cGCUG-GCGCGGCGgcg--UCUgccgCGCg -3'
miRNA:   3'- aCGGCgCGCGCCGCaaauaAGAa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 42028 0.72 0.737722
Target:  5'- gUGCCG-GCGCGGCGccUUUAUagcccgccccgCUUUGCg -3'
miRNA:   3'- -ACGGCgCGCGCCGC--AAAUAa----------GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 102763 0.72 0.737722
Target:  5'- gUGCCGCGUGCGcGCGcc-GUUCU--GCa -3'
miRNA:   3'- -ACGGCGCGCGC-CGCaaaUAAGAagCG- -5'
6500 5' -53.3 NC_001847.1 + 42955 0.72 0.74072
Target:  5'- cGCCGCGCGCGGgGggggcgggcCGCc -3'
miRNA:   3'- aCGGCGCGCGCCgCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 126375 0.72 0.741718
Target:  5'- gGCCGCGCcCGGCGgaUAUgccauuauaaugUCGCa -3'
miRNA:   3'- aCGGCGCGcGCCGCaaAUAaga---------AGCG- -5'
6500 5' -53.3 NC_001847.1 + 98809 0.72 0.741718
Target:  5'- cGCgGCGCGCGGCacgagcuuaaagUAggCUUCGUa -3'
miRNA:   3'- aCGgCGCGCGCCGcaa---------AUaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 100479 0.72 0.745696
Target:  5'- cUGCCGCuGCGCGGCcgcccccUCggCGCg -3'
miRNA:   3'- -ACGGCG-CGCGCCGcaaaua-AGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 83256 0.72 0.747679
Target:  5'- gGCCGaaaGCGCGGCGg--GggCgggCGCa -3'
miRNA:   3'- aCGGCg--CGCGCCGCaaaUaaGaa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.