miRNA display CGI


Results 101 - 120 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 33691 0.72 0.747679
Target:  5'- gGCCGCGCgGCGGCaGU---UUCcgCGCc -3'
miRNA:   3'- aCGGCGCG-CGCCG-CAaauAAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 116454 0.71 0.75753
Target:  5'- cGCUGgcgcaCGCGCGGCGcg-GUUCUgcucagcgUCGCg -3'
miRNA:   3'- aCGGC-----GCGCGCCGCaaaUAAGA--------AGCG- -5'
6500 5' -53.3 NC_001847.1 + 120199 0.71 0.75753
Target:  5'- gGCCGCGCgaGCGGCGcccg--CU-CGCa -3'
miRNA:   3'- aCGGCGCG--CGCCGCaaauaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 66057 0.71 0.758509
Target:  5'- cGuCCGCGCGCGGCGccagacgcggCgagCGCg -3'
miRNA:   3'- aC-GGCGCGCGCCGCaaauaa----Gaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 5883 0.71 0.764357
Target:  5'- cGCUGCGCGCagGGCGgccgcgccgUCGCa -3'
miRNA:   3'- aCGGCGCGCG--CCGCaaauaaga-AGCG- -5'
6500 5' -53.3 NC_001847.1 + 105171 0.71 0.767264
Target:  5'- aGCCGCGCgaagGCGGCGUgcagGUacaugCU-CGCu -3'
miRNA:   3'- aCGGCGCG----CGCCGCAaa--UAa----GAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 14372 0.71 0.767264
Target:  5'- cGCCaGCGCGCGGuCGUagAggCU-CGCc -3'
miRNA:   3'- aCGG-CGCGCGCC-GCAaaUaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 2648 0.71 0.767264
Target:  5'- cGCCGCuuGCGGCGc-----CUUCGCc -3'
miRNA:   3'- aCGGCGcgCGCCGCaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 53880 0.71 0.773045
Target:  5'- cGCCGCGgggGCGGCGggccccccgUCcUCGCg -3'
miRNA:   3'- aCGGCGCg--CGCCGCaaaua----AGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 52593 0.71 0.776872
Target:  5'- -aCCGCGCGCGGUGcg----CUUCGg -3'
miRNA:   3'- acGGCGCGCGCCGCaaauaaGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 92200 0.71 0.776872
Target:  5'- -cCCGCGCGCGGCGUcggccgCUUgGg -3'
miRNA:   3'- acGGCGCGCGCCGCAaauaa-GAAgCg -5'
6500 5' -53.3 NC_001847.1 + 75946 0.71 0.786344
Target:  5'- cGCCGCcacaCGCGGCGUgUGcUCgUUGCa -3'
miRNA:   3'- aCGGCGc---GCGCCGCAaAUaAGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 94238 0.71 0.786344
Target:  5'- cGCC-CGCGCGGCGccgUGgagCggcUCGCg -3'
miRNA:   3'- aCGGcGCGCGCCGCaa-AUaa-Ga--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 114130 0.71 0.786344
Target:  5'- cGCaCGCGCGCucGGCGUgag---UUCGCa -3'
miRNA:   3'- aCG-GCGCGCG--CCGCAaauaagAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 83140 0.71 0.786344
Target:  5'- gGCCGC-CGCGGCGUcgGgcgCgucCGCg -3'
miRNA:   3'- aCGGCGcGCGCCGCAaaUaa-Gaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 15302 0.71 0.786344
Target:  5'- gGCUGCGCGCGgGCGUg-------CGCg -3'
miRNA:   3'- aCGGCGCGCGC-CGCAaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 46588 0.71 0.786344
Target:  5'- cGCCGCGCGCGaGCGcgg--UCacgccacgCGCa -3'
miRNA:   3'- aCGGCGCGCGC-CGCaaauaAGaa------GCG- -5'
6500 5' -53.3 NC_001847.1 + 34143 0.71 0.795671
Target:  5'- gGCCGC-CGCGGCGagcgcgCUgCGCg -3'
miRNA:   3'- aCGGCGcGCGCCGCaaauaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 115818 0.71 0.795671
Target:  5'- cGCUGCGCuGCGGCGggcucugcggaUUUAUaCUUgGCc -3'
miRNA:   3'- aCGGCGCG-CGCCGC-----------AAAUAaGAAgCG- -5'
6500 5' -53.3 NC_001847.1 + 34268 0.71 0.795671
Target:  5'- aGaCCgGCGCGCGGCGgcUGggCgcCGCg -3'
miRNA:   3'- aC-GG-CGCGCGCCGCaaAUaaGaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.