miRNA display CGI


Results 121 - 140 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 34268 0.71 0.795671
Target:  5'- aGaCCgGCGCGCGGCGgcUGggCgcCGCg -3'
miRNA:   3'- aC-GG-CGCGCGCCGCaaAUaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 42349 0.71 0.795671
Target:  5'- gUGUgGCGCgGCGGCGacgUAcUCUUCGa -3'
miRNA:   3'- -ACGgCGCG-CGCCGCaa-AUaAGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 89871 0.71 0.795671
Target:  5'- gGCuCGC-CGCGGCGgg----CUUCGCc -3'
miRNA:   3'- aCG-GCGcGCGCCGCaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 73179 0.71 0.798438
Target:  5'- cGCCGCGC-CGGCGggcacggcgCGCg -3'
miRNA:   3'- aCGGCGCGcGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 33580 0.7 0.801193
Target:  5'- gGCCGUGCGCGGUGccgacgacgUCcugCGCc -3'
miRNA:   3'- aCGGCGCGCGCCGCaaaua----AGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 101585 0.7 0.804842
Target:  5'- gGCCGCcucCGCGGCGUcugccgccUCUUCGg -3'
miRNA:   3'- aCGGCGc--GCGCCGCAaaua----AGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 36344 0.7 0.804842
Target:  5'- gUGCCGCGCGCcGCGg-----CgcgCGCa -3'
miRNA:   3'- -ACGGCGCGCGcCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 4997 0.7 0.804842
Target:  5'- gGCCGCggcaaaGCGCGGCGgcgg--CggCGCg -3'
miRNA:   3'- aCGGCG------CGCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 62561 0.7 0.804842
Target:  5'- cUGCCGC-CGCGGCcgcgGUUgcucggCUUUGCg -3'
miRNA:   3'- -ACGGCGcGCGCCG----CAAauaa--GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 44022 0.7 0.804842
Target:  5'- gGCCGCGUGUGuGCGggcUUGUgggCgcUCGCg -3'
miRNA:   3'- aCGGCGCGCGC-CGCa--AAUAa--Ga-AGCG- -5'
6500 5' -53.3 NC_001847.1 + 50102 0.7 0.804842
Target:  5'- cUGCCGCGCcggGCGGCGUagAg----CGCc -3'
miRNA:   3'- -ACGGCGCG---CGCCGCAaaUaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 107810 0.7 0.804842
Target:  5'- gGCCGCggcaaaGCGCGGCGgcgg--CggCGCg -3'
miRNA:   3'- aCGGCG------CGCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 109948 0.7 0.804842
Target:  5'- gGCCGCGCGCGGgGc-------UCGCu -3'
miRNA:   3'- aCGGCGCGCGCCgCaaauaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 59608 0.7 0.807562
Target:  5'- cGCCGagauCGCGCGGUGcgccgugcgcugCUUCGCg -3'
miRNA:   3'- aCGGC----GCGCGCCGCaaauaa------GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 133584 0.7 0.812956
Target:  5'- cGCCGUGCuggccucGCGGCGcg---UCUUCGg -3'
miRNA:   3'- aCGGCGCG-------CGCCGCaaauaAGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 30771 0.7 0.812956
Target:  5'- cGCCGUGCuggccucGCGGCGcg---UCUUCGg -3'
miRNA:   3'- aCGGCGCG-------CGCCGCaaauaAGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 59363 0.7 0.812956
Target:  5'- cGCCGCGCcgagcccGCGGCcg-UGUUCacccgCGCg -3'
miRNA:   3'- aCGGCGCG-------CGCCGcaaAUAAGaa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 45545 0.7 0.813849
Target:  5'- gUGCCGCGCagcgcguucaccGCGGCGgcg-----UCGCg -3'
miRNA:   3'- -ACGGCGCG------------CGCCGCaaauaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 55341 0.7 0.813849
Target:  5'- gGCCGCuCGCGGCGgug---CUgaaCGCg -3'
miRNA:   3'- aCGGCGcGCGCCGCaaauaaGAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 62083 0.7 0.813849
Target:  5'- -uCCGCGCccGCGGCGcguug-CUUCGCc -3'
miRNA:   3'- acGGCGCG--CGCCGCaaauaaGAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.