miRNA display CGI


Results 141 - 160 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 45545 0.7 0.813849
Target:  5'- gUGCCGCGCagcgcguucaccGCGGCGgcg-----UCGCg -3'
miRNA:   3'- -ACGGCGCG------------CGCCGCaaauaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 70451 0.7 0.813849
Target:  5'- gGCCGCGCGCGGCaggaaaaacaugGUg---UCc-CGCa -3'
miRNA:   3'- aCGGCGCGCGCCG------------CAaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 101462 0.7 0.817404
Target:  5'- cUGCCGcCGCGCGGCcgcaagggCggCGCg -3'
miRNA:   3'- -ACGGC-GCGCGCCGcaaauaa-GaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 99690 0.7 0.818288
Target:  5'- uUGCgGCGCGCGGCGcgggccgccguaaagUCagCGCg -3'
miRNA:   3'- -ACGgCGCGCGCCGCaaaua----------AGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 44910 0.7 0.818288
Target:  5'- aGCCGCG-GCGGCGgccgcgaccgugUCGCu -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauaaga----AGCG- -5'
6500 5' -53.3 NC_001847.1 + 7898 0.7 0.822683
Target:  5'- aGCCGCGCGgGGCGcgcgg-CggcCGCc -3'
miRNA:   3'- aCGGCGCGCgCCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 1161 0.7 0.822683
Target:  5'- aUGCCGCGCGCgcucccagccccGGCGccUUAU-CU-CGCu -3'
miRNA:   3'- -ACGGCGCGCG------------CCGCa-AAUAaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 116396 0.7 0.831334
Target:  5'- aGCCGCG-GCGGCGgcgc-UCUggGCc -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauaAGAagCG- -5'
6500 5' -53.3 NC_001847.1 + 74409 0.7 0.831334
Target:  5'- cGCCGCGCGCGcGCGggccgcCgaCGUa -3'
miRNA:   3'- aCGGCGCGCGC-CGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 65918 0.7 0.831334
Target:  5'- cGCCGU-CGCGGCGUcggcGUUCccCGCg -3'
miRNA:   3'- aCGGCGcGCGCCGCAaa--UAAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 41033 0.7 0.831334
Target:  5'- gGgCGCGcCGCGGCGUUUAgcacaUGCa -3'
miRNA:   3'- aCgGCGC-GCGCCGCAAAUaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 46944 0.7 0.83559
Target:  5'- gGCCGCGUGCGGCGaagccaaggaGCc -3'
miRNA:   3'- aCGGCGCGCGCCGCaaauaagaagCG- -5'
6500 5' -53.3 NC_001847.1 + 133550 0.7 0.839796
Target:  5'- cGCCGCGCGCuGGCccgag--CggCGCg -3'
miRNA:   3'- aCGGCGCGCG-CCGcaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 35942 0.7 0.839796
Target:  5'- cGCCGcCGCGCGGCcg-----CcUCGCg -3'
miRNA:   3'- aCGGC-GCGCGCCGcaaauaaGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 15043 0.7 0.839796
Target:  5'- cGCCGaCGCGCGgGCGcUUUAU-CUccCGCc -3'
miRNA:   3'- aCGGC-GCGCGC-CGC-AAAUAaGAa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 104932 0.7 0.839796
Target:  5'- gGgCGCGCGCGGC-----UUCggCGCg -3'
miRNA:   3'- aCgGCGCGCGCCGcaaauAAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 106661 0.7 0.839796
Target:  5'- gGCgGCGcCGCGGCGUccg--CggCGCg -3'
miRNA:   3'- aCGgCGC-GCGCCGCAaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 88388 0.7 0.839796
Target:  5'- gGCCcCGCGCGGCGgg----CgggCGCg -3'
miRNA:   3'- aCGGcGCGCGCCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 45327 0.7 0.839796
Target:  5'- gGCCGCGCGCuccacGGCGgcUgccacggcGUUCgccagCGCg -3'
miRNA:   3'- aCGGCGCGCG-----CCGCaaA--------UAAGaa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 30737 0.7 0.839796
Target:  5'- cGCCGCGCGCuGGCccgag--CggCGCg -3'
miRNA:   3'- aCGGCGCGCG-CCGcaaauaaGaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.