miRNA display CGI


Results 161 - 180 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 123702 0.69 0.845602
Target:  5'- aGCCGCugGCGCGGgGUcgcacggcagcaCUUCGCu -3'
miRNA:   3'- aCGGCG--CGCGCCgCAaauaa-------GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 88919 0.69 0.84806
Target:  5'- uUGCgCGCGCGCGGC------UCUgCGCc -3'
miRNA:   3'- -ACG-GCGCGCGCCGcaaauaAGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 122464 0.69 0.84806
Target:  5'- cGCCGaCGCGCaGUGcag---CUUCGCg -3'
miRNA:   3'- aCGGC-GCGCGcCGCaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 107047 0.69 0.852115
Target:  5'- gUGUCGCGCGCGGCcccgggcaggCGCc -3'
miRNA:   3'- -ACGGCGCGCGCCGcaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 24247 0.69 0.856117
Target:  5'- aGCCGcCGCGCGGCGgg----CgagaGCa -3'
miRNA:   3'- aCGGC-GCGCGCCGCaaauaaGaag-CG- -5'
6500 5' -53.3 NC_001847.1 + 10813 0.69 0.856117
Target:  5'- cGCCGCGCGCaGGCGcg----CcUUGCc -3'
miRNA:   3'- aCGGCGCGCG-CCGCaaauaaGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 104342 0.69 0.856117
Target:  5'- uUGCCGCGgcggcagaCGCGGCGgcg--UCcgCGCc -3'
miRNA:   3'- -ACGGCGC--------GCGCCGCaaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 109173 0.69 0.856117
Target:  5'- gGCCGCGCGCuuguucccaaGGCGUcgGggCgggUGCg -3'
miRNA:   3'- aCGGCGCGCG----------CCGCAaaUaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 113626 0.69 0.856117
Target:  5'- cGCCGCGCGCaGGCGcg----CcUUGCc -3'
miRNA:   3'- aCGGCGCGCG-CCGCaaauaaGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 101000 0.69 0.856117
Target:  5'- gUGCCGC-CGCGGCGgcaGUUaCUgcCGCc -3'
miRNA:   3'- -ACGGCGcGCGCCGCaaaUAA-GAa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 16205 0.69 0.856117
Target:  5'- gGcCCGCGCcauGCGGCGUUgcagcCUcCGCg -3'
miRNA:   3'- aC-GGCGCG---CGCCGCAAauaa-GAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 22114 0.69 0.856117
Target:  5'- cUGCCGgcgucccagaCGCGCGGCGgcgug-CUggagCGCa -3'
miRNA:   3'- -ACGGC----------GCGCGCCGCaaauaaGAa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 79486 0.69 0.856117
Target:  5'- aGCCGgaGCGCGGCGcgcacgUCUgUGCu -3'
miRNA:   3'- aCGGCg-CGCGCCGCaaaua-AGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 66296 0.69 0.856117
Target:  5'- cGCCGcCGCGCucGCGcccgagcUCUUCGCg -3'
miRNA:   3'- aCGGC-GCGCGc-CGCaaaua--AGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 87705 0.69 0.856117
Target:  5'- cGCCGCG-GCGGCGgcgaagccgacgacgUCGCa -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauaaga-------AGCG- -5'
6500 5' -53.3 NC_001847.1 + 30222 0.69 0.859281
Target:  5'- aGCCGCGCGCGcccgggccgaggugcGCGUg------UCGCu -3'
miRNA:   3'- aCGGCGCGCGC---------------CGCAaauaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 52417 0.69 0.861632
Target:  5'- gGCgGCGCGCGcugucgagcucgaaGCGggcccgCUUCGCg -3'
miRNA:   3'- aCGgCGCGCGC--------------CGCaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 40945 0.69 0.862411
Target:  5'- cGCCGCGCGCaGCGccucgaaCUgcccgCGCg -3'
miRNA:   3'- aCGGCGCGCGcCGCaaauaa-GAa----GCG- -5'
6500 5' -53.3 NC_001847.1 + 100657 0.69 0.863188
Target:  5'- gGCCGCGCugcuGCGGCGggggGUccccaggaggcuuUCU-CGCa -3'
miRNA:   3'- aCGGCGCG----CGCCGCaaa-UA-------------AGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 41595 0.69 0.863962
Target:  5'- cGUCGaggccaGCGUGGCG-UUGUUCUgcucCGCc -3'
miRNA:   3'- aCGGCg-----CGCGCCGCaAAUAAGAa---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.