miRNA display CGI


Results 101 - 120 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 119912 0.66 0.953079
Target:  5'- cGCCGcCGC-CGGCGcgUA--CUUCGUc -3'
miRNA:   3'- aCGGC-GCGcGCCGCaaAUaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 14338 0.66 0.953079
Target:  5'- gGCCGgGCGUGGUGg-----CggCGCc -3'
miRNA:   3'- aCGGCgCGCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 43269 0.66 0.953079
Target:  5'- gUGCUGCGCGUccGGCGcuucggCUuccugaUCGCg -3'
miRNA:   3'- -ACGGCGCGCG--CCGCaaauaaGA------AGCG- -5'
6500 5' -53.3 NC_001847.1 + 123828 0.66 0.953079
Target:  5'- aGCCGCcCGCcggccucggcgGGCGcgcccaUCUUCGCg -3'
miRNA:   3'- aCGGCGcGCG-----------CCGCaaaua-AGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 110680 0.66 0.953079
Target:  5'- cUGCCGCGCuGCGuGCGcgaggGUgagggCggCGCg -3'
miRNA:   3'- -ACGGCGCG-CGC-CGCaaa--UAa----GaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 122700 0.66 0.953079
Target:  5'- cGCCGCGCGCGcUGUgc---CggCGCc -3'
miRNA:   3'- aCGGCGCGCGCcGCAaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 96557 0.66 0.953079
Target:  5'- aGCCGCGCGC-GCGg----UCUgcUgGCc -3'
miRNA:   3'- aCGGCGCGCGcCGCaaauaAGA--AgCG- -5'
6500 5' -53.3 NC_001847.1 + 76490 0.66 0.952668
Target:  5'- cGCCGCaaGCGUgcgacccGGCGgaaa-UCUUCGUg -3'
miRNA:   3'- aCGGCG--CGCG-------CCGCaaauaAGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 68480 0.66 0.952255
Target:  5'- cGCCGCGCG-GGCGcaag-----CGCg -3'
miRNA:   3'- aCGGCGCGCgCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 4201 0.66 0.95184
Target:  5'- gGCCGCGCGCaGGCagccaaagccCUgCGCg -3'
miRNA:   3'- aCGGCGCGCG-CCGcaaauaa---GAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 53307 0.66 0.951002
Target:  5'- cGCCGCcaGUGCGGCGggcgacaggacggCGCg -3'
miRNA:   3'- aCGGCG--CGCGCCGCaaauaagaa----GCG- -5'
6500 5' -53.3 NC_001847.1 + 28613 0.66 0.951002
Target:  5'- gGCCGCGCGCuacgcGGCGgccgcggggccCGCg -3'
miRNA:   3'- aCGGCGCGCG-----CCGCaaauaagaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 131426 0.66 0.951002
Target:  5'- gGCCGCGCGCuacgcGGCGgccgcggggccCGCg -3'
miRNA:   3'- aCGGCGCGCG-----CCGCaaauaagaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 59812 0.66 0.95058
Target:  5'- cUGCCGCccgcccgggaGCGCGGUGgccuaccccuuUUUUUUGCu -3'
miRNA:   3'- -ACGGCG----------CGCGCCGCaaau-------AAGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 107109 0.66 0.95058
Target:  5'- cGCCGCGUcUGGCGUgugcagg-CGCu -3'
miRNA:   3'- aCGGCGCGcGCCGCAaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 77038 0.66 0.950155
Target:  5'- cGCCGCGCcgcagaaguaguaGCGGCGcggcacccgCUgcggCGCg -3'
miRNA:   3'- aCGGCGCG-------------CGCCGCaaauaa---GAa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 105966 0.66 0.948866
Target:  5'- cGCCgGCgGCGCGGCGggccgcCUccagcgccUCGCg -3'
miRNA:   3'- aCGG-CG-CGCGCCGCaaauaaGA--------AGCG- -5'
6500 5' -53.3 NC_001847.1 + 132186 0.66 0.948866
Target:  5'- cGCUGCGCGCcgaGGCGgccg--CcgCGCu -3'
miRNA:   3'- aCGGCGCGCG---CCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 133391 0.66 0.948866
Target:  5'- -uCCGCgGCGCGGUGgagUAccUCUgcgCGCg -3'
miRNA:   3'- acGGCG-CGCGCCGCaa-AUa-AGAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 16048 0.66 0.948866
Target:  5'- cGCCGCccCGCGGCGgccg--CggCGCc -3'
miRNA:   3'- aCGGCGc-GCGCCGCaaauaaGaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.