miRNA display CGI


Results 141 - 160 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 104911 0.67 0.946221
Target:  5'- gGCC-CGCGCGGCGgcgggc---CGCg -3'
miRNA:   3'- aCGGcGCGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 74134 0.67 0.946221
Target:  5'- gUGCUGCGCGUGGCGccggggcgaaugAUggCggCGCc -3'
miRNA:   3'- -ACGGCGCGCGCCGCaaa---------UAa-GaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 2098 0.67 0.946221
Target:  5'- gGCC-CGCGCGGCGgcgggc---CGCg -3'
miRNA:   3'- aCGGcGCGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 81170 0.67 0.94532
Target:  5'- cGCCGCGCcgcucggagggcucGCGGCGgcgccagccggCGCg -3'
miRNA:   3'- aCGGCGCG--------------CGCCGCaaauaagaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 29990 0.67 0.944866
Target:  5'- gGCCG-GCGCGGCGggagccgccgCUgccCGCc -3'
miRNA:   3'- aCGGCgCGCGCCGCaaauaa----GAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 132803 0.67 0.944866
Target:  5'- gGCCG-GCGCGGCGggagccgccgCUgccCGCc -3'
miRNA:   3'- aCGGCgCGCGCCGCaaauaa----GAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 29407 0.67 0.944409
Target:  5'- gGCCGCGCugGCGGCGcggaccgUGgccccgCU-CGCg -3'
miRNA:   3'- aCGGCGCG--CGCCGCaa-----AUaa----GAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 129480 0.67 0.944409
Target:  5'- cGCCGCGCGCGaCGgcg------CGCa -3'
miRNA:   3'- aCGGCGCGCGCcGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 132220 0.67 0.944409
Target:  5'- gGCCGCGCugGCGGCGcggaccgUGgccccgCU-CGCg -3'
miRNA:   3'- aCGGCGCG--CGCCGCaa-----AUaa----GAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 49426 0.67 0.944409
Target:  5'- cUGCCGcCGUGCacuGGCGcUUGUggcUCGCu -3'
miRNA:   3'- -ACGGC-GCGCG---CCGCaAAUAagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 81615 0.67 0.944409
Target:  5'- gGCCGCcgGCGUGGcCGUaaagacCUUUGCg -3'
miRNA:   3'- aCGGCG--CGCGCC-GCAaauaa-GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 2537 0.67 0.944409
Target:  5'- gGCCGCGgGaccgcugcucucCGGCGggcugUCUUCGg -3'
miRNA:   3'- aCGGCGCgC------------GCCGCaaauaAGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 105623 0.67 0.944409
Target:  5'- cGCCGCGCG-GGCGag----CUcUGCg -3'
miRNA:   3'- aCGGCGCGCgCCGCaaauaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 52699 0.67 0.944409
Target:  5'- gGCCGUGCGCGGgGUUg--------- -3'
miRNA:   3'- aCGGCGCGCGCCgCAAauaagaagcg -5'
6500 5' -53.3 NC_001847.1 + 71734 0.67 0.944409
Target:  5'- cGCCGCGUGCGcuccCGUgcgAggCUgcggCGCa -3'
miRNA:   3'- aCGGCGCGCGCc---GCAaa-UaaGAa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 45625 0.67 0.944409
Target:  5'- cUGCCGCccggcggcaGCGCGGCGcgcg--CUgcCGCa -3'
miRNA:   3'- -ACGGCG---------CGCGCCGCaaauaaGAa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 104132 0.67 0.94395
Target:  5'- cGCgCGCGCGcCGGCaacgccggacaugGUgccg-CUUCGCu -3'
miRNA:   3'- aCG-GCGCGC-GCCG-------------CAaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 27766 0.67 0.943488
Target:  5'- gGCUGUGCGgGGCGUacaauaaaCUgCGCg -3'
miRNA:   3'- aCGGCGCGCgCCGCAaauaa---GAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 43287 0.67 0.942557
Target:  5'- cGCCGCGCGUGcGCGgg----CUgcggaguacgaagCGCg -3'
miRNA:   3'- aCGGCGCGCGC-CGCaaauaaGAa------------GCG- -5'
6500 5' -53.3 NC_001847.1 + 104523 0.67 0.941142
Target:  5'- cGCCGCguuugcggcgcuGCGCGGCGgccccggggccgCUaCGCg -3'
miRNA:   3'- aCGGCG------------CGCGCCGCaaauaa------GAaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.