miRNA display CGI


Results 81 - 100 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 21008 0.68 0.918393
Target:  5'- -aCCGCGCGCGGCuGUgcgggCgacccugCGCa -3'
miRNA:   3'- acGGCGCGCGCCG-CAaauaaGaa-----GCG- -5'
6500 5' -53.3 NC_001847.1 + 21528 0.74 0.623972
Target:  5'- cGCCuGCGCGCGGCGuUUUAUUUa---- -3'
miRNA:   3'- aCGG-CGCGCGCCGC-AAAUAAGaagcg -5'
6500 5' -53.3 NC_001847.1 + 22114 0.69 0.856117
Target:  5'- cUGCCGgcgucccagaCGCGCGGCGgcgug-CUggagCGCa -3'
miRNA:   3'- -ACGGC----------GCGCGCCGCaaauaaGAa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 22260 0.68 0.906234
Target:  5'- aGCCgacgaGCGCGCGGCGcag---CgcgCGCg -3'
miRNA:   3'- aCGG-----CGCGCGCCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 22401 0.66 0.960788
Target:  5'- gGCCGCG-GCGaGCGUgc--UCgucCGCg -3'
miRNA:   3'- aCGGCGCgCGC-CGCAaauaAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 23885 0.66 0.957051
Target:  5'- cGCaGCGCGCGcaucaGCGgcagGUUCgggCGCa -3'
miRNA:   3'- aCGgCGCGCGC-----CGCaaa-UAAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 24247 0.69 0.856117
Target:  5'- aGCCGcCGCGCGGCGgg----CgagaGCa -3'
miRNA:   3'- aCGGC-GCGCGCCGCaaauaaGaag-CG- -5'
6500 5' -53.3 NC_001847.1 + 24344 0.74 0.592583
Target:  5'- cGCCGCGCGCGGCc-----UUUUCGg -3'
miRNA:   3'- aCGGCGCGCGCCGcaaauaAGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 27418 0.73 0.686687
Target:  5'- uUGCCGCcgGCGCGGuCGgug--UCgUUCGCa -3'
miRNA:   3'- -ACGGCG--CGCGCC-GCaaauaAG-AAGCG- -5'
6500 5' -53.3 NC_001847.1 + 27515 0.66 0.956665
Target:  5'- cGCCGC-CGCGGCGgcggcggggaCGCc -3'
miRNA:   3'- aCGGCGcGCGCCGCaaauaagaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 27741 0.67 0.934753
Target:  5'- aGCCGCG-GCGGCGg-------UUGCg -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 27766 0.67 0.943488
Target:  5'- gGCUGUGCGgGGCGUacaauaaaCUgCGCg -3'
miRNA:   3'- aCGGCGCGCgCCGCAaauaa---GAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 27950 0.69 0.878988
Target:  5'- gGCCGCgGCGCGcGCGc----UCgcggUCGCg -3'
miRNA:   3'- aCGGCG-CGCGC-CGCaaauaAGa---AGCG- -5'
6500 5' -53.3 NC_001847.1 + 28005 0.73 0.644944
Target:  5'- cUGCaGCGCGCGGCGUgccgcgCUUacgaGCg -3'
miRNA:   3'- -ACGgCGCGCGCCGCAaauaa-GAAg---CG- -5'
6500 5' -53.3 NC_001847.1 + 28193 0.67 0.939705
Target:  5'- gGCCGCGCGCcugcgcgccacGGCGgc-GUUCg--GCc -3'
miRNA:   3'- aCGGCGCGCG-----------CCGCaaaUAAGaagCG- -5'
6500 5' -53.3 NC_001847.1 + 28236 0.66 0.953079
Target:  5'- aUGCaGCGCGUGGUGguggagUGggCcUCGCu -3'
miRNA:   3'- -ACGgCGCGCGCCGCaa----AUaaGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 28484 0.68 0.912438
Target:  5'- cGCCGCGgacgcCGCGGCGccgccgCUagCGCg -3'
miRNA:   3'- aCGGCGC-----GCGCCGCaaauaaGAa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 28613 0.66 0.951002
Target:  5'- gGCCGCGCGCuacgcGGCGgccgcggggccCGCg -3'
miRNA:   3'- aCGGCGCGCG-----CCGCaaauaagaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 28748 0.75 0.53081
Target:  5'- cGCCGCGCGCGuGCGUgc---CgaCGCg -3'
miRNA:   3'- aCGGCGCGCGC-CGCAaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 28856 0.67 0.938735
Target:  5'- gGCCGCGCGC-GCGacgccggCggCGCu -3'
miRNA:   3'- aCGGCGCGCGcCGCaaauaa-GaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.