miRNA display CGI


Results 101 - 120 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 28963 0.66 0.967575
Target:  5'- gGCCGCG-GCGGgGUUUA-----CGCc -3'
miRNA:   3'- aCGGCGCgCGCCgCAAAUaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 29113 0.68 0.906234
Target:  5'- gGCgGCGCGCGaGCGg-----CUgCGCg -3'
miRNA:   3'- aCGgCGCGCGC-CGCaaauaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 29259 0.71 0.795671
Target:  5'- gGCCGCGCacggacuacGUGGCGgcgAUUCg-CGCg -3'
miRNA:   3'- aCGGCGCG---------CGCCGCaaaUAAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 29373 0.66 0.948866
Target:  5'- cGCUGCGCGCcgaGGCGgccg--CcgCGCu -3'
miRNA:   3'- aCGGCGCGCG---CCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 29391 0.67 0.924097
Target:  5'- cUGCCGCGCGCgaGGCccuccuaaccugGUUUGacCUgCGCg -3'
miRNA:   3'- -ACGGCGCGCG--CCG------------CAAAUaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 29407 0.67 0.944409
Target:  5'- gGCCGCGCugGCGGCGcggaccgUGgccccgCU-CGCg -3'
miRNA:   3'- aCGGCGCG--CGCCGCaa-----AUaa----GAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 29503 0.75 0.58217
Target:  5'- gGCCGCGgGCGGCGc---UUCggcCGCa -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauAAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 29533 0.66 0.959322
Target:  5'- cGCC-CGCGCGGCGcgggcgcucgaGUUCcccCGCa -3'
miRNA:   3'- aCGGcGCGCGCCGCaaa--------UAAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 29924 0.67 0.934753
Target:  5'- gUGcCCGCGCGCccgcggugGGCGgUUGUgUCUUCuuaGCg -3'
miRNA:   3'- -AC-GGCGCGCG--------CCGCaAAUA-AGAAG---CG- -5'
6500 5' -53.3 NC_001847.1 + 29979 0.66 0.962919
Target:  5'- cGCCGCcuucGCGCGGCugcagggCUaugUCGCc -3'
miRNA:   3'- aCGGCG----CGCGCCGcaaauaaGA---AGCG- -5'
6500 5' -53.3 NC_001847.1 + 29990 0.67 0.944866
Target:  5'- gGCCG-GCGCGGCGggagccgccgCUgccCGCc -3'
miRNA:   3'- aCGGCgCGCGCCGCaaauaa----GAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 30198 0.66 0.953079
Target:  5'- cGCgGUGCGCGGCGcg-------CGCg -3'
miRNA:   3'- aCGgCGCGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 30222 0.69 0.859281
Target:  5'- aGCCGCGCGCGcccgggccgaggugcGCGUg------UCGCu -3'
miRNA:   3'- aCGGCGCGCGC---------------CGCAaauaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 30284 0.69 0.878988
Target:  5'- gGCgGCGCGUGGCcUggAUg--UCGCa -3'
miRNA:   3'- aCGgCGCGCGCCGcAaaUAagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 30416 0.78 0.398128
Target:  5'- cGCCGCGcCGCGGCGggc--UCU-CGCa -3'
miRNA:   3'- aCGGCGC-GCGCCGCaaauaAGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 30578 0.66 0.948866
Target:  5'- -uCCGCgGCGCGGUGgagUAccUCUgcgCGCg -3'
miRNA:   3'- acGGCG-CGCGCCGCaa-AUa-AGAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 30612 0.74 0.592583
Target:  5'- gGCCGCgGCGCGGCGgcgg--CUgaUCGUg -3'
miRNA:   3'- aCGGCG-CGCGCCGCaaauaaGA--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 30665 0.68 0.898465
Target:  5'- gGCCGCGCGaCGGCccggccgUCgggcaggCGCa -3'
miRNA:   3'- aCGGCGCGC-GCCGcaaaua-AGaa-----GCG- -5'
6500 5' -53.3 NC_001847.1 + 30737 0.7 0.839796
Target:  5'- cGCCGCGCGCuGGCccgag--CggCGCg -3'
miRNA:   3'- aCGGCGCGCG-CCGcaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 30771 0.7 0.812956
Target:  5'- cGCCGUGCuggccucGCGGCGcg---UCUUCGg -3'
miRNA:   3'- aCGGCGCG-------CGCCGCaaauaAGAAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.