miRNA display CGI


Results 121 - 140 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 30922 0.73 0.665873
Target:  5'- cGCCgGCgGUGCGGCGgaggc-CUUCGCa -3'
miRNA:   3'- aCGG-CG-CGCGCCGCaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 31103 0.66 0.948866
Target:  5'- gGCCGggcaGCGCGGUGgcaugcCUUCGg -3'
miRNA:   3'- aCGGCg---CGCGCCGCaaauaaGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 31154 0.72 0.707312
Target:  5'- gGCCGCG-GCGGUGgcc-UUCUgCGCg -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauAAGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 31192 0.68 0.906234
Target:  5'- aGCCGCGCGCcgaGGCGccgccgCUggUGCu -3'
miRNA:   3'- aCGGCGCGCG---CCGCaaauaaGAa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 31212 0.67 0.938735
Target:  5'- cGCUGaggGCGCGGCGUgggcg---CGCg -3'
miRNA:   3'- aCGGCg--CGCGCCGCAaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 31226 0.66 0.956276
Target:  5'- gGCCGCG-GCGGCGccgcccgCggcCGCg -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauaa-Gaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 31316 0.76 0.520724
Target:  5'- cGCCGCGgGCGGCGgccugGUggagCGCg -3'
miRNA:   3'- aCGGCGCgCGCCGCaaa--UAagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 31423 0.67 0.939705
Target:  5'- cGCCgGCGgGCGGCGgccgg-CggcCGCg -3'
miRNA:   3'- aCGG-CGCgCGCCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 32190 0.77 0.471531
Target:  5'- gGCgCGCGCGCGGCGgagGUUac-CGCg -3'
miRNA:   3'- aCG-GCGCGCGCCGCaaaUAAgaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 32759 0.67 0.939705
Target:  5'- -uUCGCGgGCGGCG------CUUCGCg -3'
miRNA:   3'- acGGCGCgCGCCGCaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 32903 0.69 0.878988
Target:  5'- cGCCGCGCGCGaGCGc-----CUggaCGCc -3'
miRNA:   3'- aCGGCGCGCGC-CGCaaauaaGAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 32941 0.66 0.946668
Target:  5'- -cCCGCGCGCGGUGcccgcggacagCGCg -3'
miRNA:   3'- acGGCGCGCGCCGCaaauaagaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 33061 0.66 0.960788
Target:  5'- gGCCgagGCGCuGCGGCaGUacuUUCUgCGCg -3'
miRNA:   3'- aCGG---CGCG-CGCCG-CAaauAAGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 33124 0.66 0.947994
Target:  5'- cGaCCGCG-GCGGCGgcgagcgCUUcCGCg -3'
miRNA:   3'- aC-GGCGCgCGCCGCaaauaa-GAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 33232 0.67 0.92955
Target:  5'- cGCCGCGCcgggcgccGCGGCGccuccgCUgcCGCg -3'
miRNA:   3'- aCGGCGCG--------CGCCGCaaauaaGAa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 33333 0.66 0.957051
Target:  5'- gGCgGCGCGCuGCGUgacggUGggCcccUCGCa -3'
miRNA:   3'- aCGgCGCGCGcCGCAa----AUaaGa--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 33580 0.7 0.801193
Target:  5'- gGCCGUGCGCGGUGccgacgacgUCcugCGCc -3'
miRNA:   3'- aCGGCGCGCGCCGCaaaua----AGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 33651 0.67 0.92955
Target:  5'- aGgCGCGCGCGcGCGUggccgCggcccgCGCg -3'
miRNA:   3'- aCgGCGCGCGC-CGCAaauaaGaa----GCG- -5'
6500 5' -53.3 NC_001847.1 + 33691 0.72 0.747679
Target:  5'- gGCCGCGCgGCGGCaGU---UUCcgCGCc -3'
miRNA:   3'- aCGGCGCG-CGCCG-CAaauAAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 33798 0.74 0.603026
Target:  5'- gGCUGCGCGCGGCGcc----CggCGCg -3'
miRNA:   3'- aCGGCGCGCGCCGCaaauaaGaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.