miRNA display CGI


Results 141 - 160 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 33891 0.68 0.908121
Target:  5'- cGCCGCGCGUGGCcgcgggcg--UGCa -3'
miRNA:   3'- aCGGCGCGCGCCGcaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 34053 0.66 0.967575
Target:  5'- cGCgGCGCGCG-CGUUU-UUCgaggggcaCGCg -3'
miRNA:   3'- aCGgCGCGCGCcGCAAAuAAGaa------GCG- -5'
6500 5' -53.3 NC_001847.1 + 34104 0.67 0.92848
Target:  5'- gGCuCGCGCgGCGGCGgagccugCggCGCc -3'
miRNA:   3'- aCG-GCGCG-CGCCGCaaauaa-GaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 34143 0.71 0.795671
Target:  5'- gGCCGC-CGCGGCGagcgcgCUgCGCg -3'
miRNA:   3'- aCGGCGcGCGCCGCaaauaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 34150 0.75 0.53081
Target:  5'- cUGCCGC-CGCGGCGgcaccUUCcgUCGCu -3'
miRNA:   3'- -ACGGCGcGCGCCGCaaau-AAGa-AGCG- -5'
6500 5' -53.3 NC_001847.1 + 34268 0.71 0.795671
Target:  5'- aGaCCgGCGCGCGGCGgcUGggCgcCGCg -3'
miRNA:   3'- aC-GG-CGCGCGCCGCaaAUaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 34674 0.69 0.883318
Target:  5'- gGCCGCGCaGCGGCaGgaggagcgCUggCGCg -3'
miRNA:   3'- aCGGCGCG-CGCCG-Caaauaa--GAa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 34744 0.66 0.967575
Target:  5'- cGCaUGCGCGgGGCuUUUAUggcccaggUCGCg -3'
miRNA:   3'- aCG-GCGCGCgCCGcAAAUAaga-----AGCG- -5'
6500 5' -53.3 NC_001847.1 + 34772 0.67 0.924097
Target:  5'- gGCUGCGCGCcGCGgccg--CggCGCg -3'
miRNA:   3'- aCGGCGCGCGcCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 35246 0.68 0.909986
Target:  5'- gGCCggcggGCGCGCGGCGgagaucagCcgCGCu -3'
miRNA:   3'- aCGG-----CGCGCGCCGCaaauaa--GaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 35614 0.68 0.899784
Target:  5'- cGCaaacgaaaGCGCGCGGCGcggggcUCggCGCa -3'
miRNA:   3'- aCGg-------CGCGCGCCGCaaaua-AGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 35942 0.7 0.839796
Target:  5'- cGCCGcCGCGCGGCcg-----CcUCGCg -3'
miRNA:   3'- aCGGC-GCGCGCCGcaaauaaGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 36030 0.69 0.888262
Target:  5'- gGCUGCGCGCGGaCGagcacuacgCGCg -3'
miRNA:   3'- aCGGCGCGCGCC-GCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 36133 0.66 0.964294
Target:  5'- aGCCGCGCGCGccGCGga-------CGCg -3'
miRNA:   3'- aCGGCGCGCGC--CGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 36213 0.68 0.893091
Target:  5'- gGCUGCGCGCccuccuGGCGgcc-UUCgaCGCg -3'
miRNA:   3'- aCGGCGCGCG------CCGCaaauAAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 36344 0.7 0.804842
Target:  5'- gUGCCGCGCGCcGCGg-----CgcgCGCa -3'
miRNA:   3'- -ACGGCGCGCGcCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 36391 0.69 0.886157
Target:  5'- aGCgCGCGcCGCGGCGacgGUgcacUCGCg -3'
miRNA:   3'- aCG-GCGC-GCGCCGCaaaUAaga-AGCG- -5'
6500 5' -53.3 NC_001847.1 + 36447 0.66 0.953079
Target:  5'- cGgCGCGCGCGGCGcgg---CUgugugaGCg -3'
miRNA:   3'- aCgGCGCGCGCCGCaaauaaGAag----CG- -5'
6500 5' -53.3 NC_001847.1 + 36488 0.68 0.912438
Target:  5'- cGCgGgCGCGUGGCGgcccUUCUggGCg -3'
miRNA:   3'- aCGgC-GCGCGCCGCaaauAAGAagCG- -5'
6500 5' -53.3 NC_001847.1 + 36534 0.68 0.893091
Target:  5'- cGCUGCGCGaGGCGg--AUUCggagauugaCGCg -3'
miRNA:   3'- aCGGCGCGCgCCGCaaaUAAGaa-------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.