miRNA display CGI


Results 161 - 180 of 533 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 36781 0.67 0.934753
Target:  5'- cGcCCGCGaCGCggacuuuggGGCGUUUugccgCUUCGUg -3'
miRNA:   3'- aC-GGCGC-GCG---------CCGCAAAuaa--GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 36982 0.67 0.92955
Target:  5'- gGgCGCGcCGCGGCGUgcug-CUgcuuaacaccUCGCu -3'
miRNA:   3'- aCgGCGC-GCGCCGCAaauaaGA----------AGCG- -5'
6500 5' -53.3 NC_001847.1 + 38070 0.74 0.598845
Target:  5'- aGCUGCGCGCGGCGgccgc----CGCg -3'
miRNA:   3'- aCGGCGCGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 38113 0.72 0.731701
Target:  5'- cGCCGCuGCcCGGCGggUGcgccgggcaccgagUCUUCGCg -3'
miRNA:   3'- aCGGCG-CGcGCCGCaaAUa-------------AGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 38207 0.67 0.934753
Target:  5'- cGCCGCuaGCGGCGacccg-CUauacgCGCa -3'
miRNA:   3'- aCGGCGcgCGCCGCaaauaaGAa----GCG- -5'
6500 5' -53.3 NC_001847.1 + 38977 0.66 0.957051
Target:  5'- gGCCGCgGCGgGGCuuaguagacgauGUggacGUUCUcgUCGCg -3'
miRNA:   3'- aCGGCG-CGCgCCG------------CAaa--UAAGA--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 39067 0.66 0.967575
Target:  5'- gGCuCGCGCaGCGG-GUUgagGUUCaUUCGg -3'
miRNA:   3'- aCG-GCGCG-CGCCgCAAa--UAAG-AAGCg -5'
6500 5' -53.3 NC_001847.1 + 39113 0.66 0.964968
Target:  5'- cGCUGCGCGacagggcuacguacaCGGCGUUgagccgcagguUUCcgCGCg -3'
miRNA:   3'- aCGGCGCGC---------------GCCGCAAau---------AAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 40181 0.73 0.666917
Target:  5'- gGCUGCGCGCGGCGgaacggc--CGCc -3'
miRNA:   3'- aCGGCGCGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 40653 0.7 0.813849
Target:  5'- cGCCGCGCcucGCGGCcUUcUGUaCUUUGCc -3'
miRNA:   3'- aCGGCGCG---CGCCGcAA-AUAaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 40945 0.69 0.862411
Target:  5'- cGCCGCGCGCaGCGccucgaaCUgcccgCGCg -3'
miRNA:   3'- aCGGCGCGCGcCGCaaauaa-GAa----GCG- -5'
6500 5' -53.3 NC_001847.1 + 41033 0.7 0.831334
Target:  5'- gGgCGCGcCGCGGCGUUUAgcacaUGCa -3'
miRNA:   3'- aCgGCGC-GCGCCGCAAAUaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 41595 0.69 0.863962
Target:  5'- cGUCGaggccaGCGUGGCG-UUGUUCUgcucCGCc -3'
miRNA:   3'- aCGGCg-----CGCGCCGCaAAUAAGAa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 41803 0.67 0.939705
Target:  5'- cGCCGCGCGCuacgaggacguGGCGcgggAUUgg-CGCg -3'
miRNA:   3'- aCGGCGCGCG-----------CCGCaaa-UAAgaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 41891 0.68 0.897802
Target:  5'- gGCC-CGCGCGGCGaggcagagguggUCggcUCGCg -3'
miRNA:   3'- aCGGcGCGCGCCGCaaaua-------AGa--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 42028 0.72 0.737722
Target:  5'- gUGCCG-GCGCGGCGccUUUAUagcccgccccgCUUUGCg -3'
miRNA:   3'- -ACGGCgCGCGCCGC--AAAUAa----------GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 42073 0.68 0.899784
Target:  5'- gUGCCGC-UGCGGCGcaucggCcUCGCg -3'
miRNA:   3'- -ACGGCGcGCGCCGCaaauaaGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 42349 0.71 0.795671
Target:  5'- gUGUgGCGCgGCGGCGacgUAcUCUUCGa -3'
miRNA:   3'- -ACGgCGCG-CGCCGCaa-AUaAGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 42736 0.67 0.939221
Target:  5'- gGCCGCGCggGCGGCGgggcggaca-GCa -3'
miRNA:   3'- aCGGCGCG--CGCCGCaaauaagaagCG- -5'
6500 5' -53.3 NC_001847.1 + 42955 0.72 0.74072
Target:  5'- cGCCGCGCGCGGgGggggcgggcCGCc -3'
miRNA:   3'- aCGGCGCGCGCCgCaaauaagaaGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.