miRNA display CGI


Results 61 - 80 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 114130 0.71 0.786344
Target:  5'- cGCaCGCGCGCucGGCGUgag---UUCGCa -3'
miRNA:   3'- aCG-GCGCGCG--CCGCAaauaagAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 113626 0.69 0.856117
Target:  5'- cGCCGCGCGCaGGCGcg----CcUUGCc -3'
miRNA:   3'- aCGGCGCGCG-CCGCaaauaaGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 113055 0.68 0.893091
Target:  5'- aGCCgcaGCGCGuCGGCGcacg-UCUgCGCa -3'
miRNA:   3'- aCGG---CGCGC-GCCGCaaauaAGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 112889 0.66 0.957051
Target:  5'- cGCCGCGCGCu-CGUcgGcUUCUUCcuGCu -3'
miRNA:   3'- aCGGCGCGCGccGCAaaU-AAGAAG--CG- -5'
6500 5' -53.3 NC_001847.1 + 110906 0.67 0.939705
Target:  5'- cGCCGCGCGgCGGCugaacgUGgagaUCGCc -3'
miRNA:   3'- aCGGCGCGC-GCCGcaa---AUaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 110810 0.82 0.231676
Target:  5'- gGCCGCGCGCGGCGUgg------CGCg -3'
miRNA:   3'- aCGGCGCGCGCCGCAaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 110680 0.66 0.953079
Target:  5'- cUGCCGCGCuGCGuGCGcgaggGUgagggCggCGCg -3'
miRNA:   3'- -ACGGCGCG-CGC-CGCaaa--UAa----GaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 109948 0.7 0.804842
Target:  5'- gGCCGCGCGCGGgGc-------UCGCu -3'
miRNA:   3'- aCGGCGCGCGCCgCaaauaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 109173 0.69 0.856117
Target:  5'- gGCCGCGCGCuuguucccaaGGCGUcgGggCgggUGCg -3'
miRNA:   3'- aCGGCGCGCG----------CCGCAaaUaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 108551 0.66 0.964294
Target:  5'- cUGCC-CGCGgGGCG---GUUCgcCGCc -3'
miRNA:   3'- -ACGGcGCGCgCCGCaaaUAAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 108048 0.66 0.964294
Target:  5'- gGgCGCGCGCGGCaaaggGUUUgccUGCg -3'
miRNA:   3'- aCgGCGCGCGCCGcaaa-UAAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 107810 0.7 0.804842
Target:  5'- gGCCGCggcaaaGCGCGGCGgcgg--CggCGCg -3'
miRNA:   3'- aCGGCG------CGCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 107641 0.68 0.916041
Target:  5'- cGCCGCG-GCGGCGgccgaggccUCUgcCGCc -3'
miRNA:   3'- aCGGCGCgCGCCGCaaaua----AGAa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 107109 0.66 0.95058
Target:  5'- cGCCGCGUcUGGCGUgugcagg-CGCu -3'
miRNA:   3'- aCGGCGCGcGCCGCAaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 107047 0.69 0.852115
Target:  5'- gUGUCGCGCGCGGCcccgggcaggCGCc -3'
miRNA:   3'- -ACGGCGCGCGCCGcaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 106706 0.68 0.909986
Target:  5'- cGCgGCGcCGCGGCGUagccag--CGCg -3'
miRNA:   3'- aCGgCGC-GCGCCGCAaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 106661 0.7 0.839796
Target:  5'- gGCgGCGcCGCGGCGUccg--CggCGCg -3'
miRNA:   3'- aCGgCGC-GCGCCGCAaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 106537 0.67 0.934753
Target:  5'- cGCCGCGUaGCGcGCGgccg--CcUCGCg -3'
miRNA:   3'- aCGGCGCG-CGC-CGCaaauaaGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 106406 0.73 0.655418
Target:  5'- cGCaCGCGCGCGGCGacg---CUgccCGCg -3'
miRNA:   3'- aCG-GCGCGCGCCGCaaauaaGAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 106117 0.69 0.871588
Target:  5'- cGgCGCGCGCGGC------UCUgggCGCg -3'
miRNA:   3'- aCgGCGCGCGCCGcaaauaAGAa--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.