miRNA display CGI


Results 81 - 100 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 106087 0.69 0.881163
Target:  5'- cGCCGCGCGgcCGGCGagcacggcgCGCa -3'
miRNA:   3'- aCGGCGCGC--GCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 105966 0.66 0.948866
Target:  5'- cGCCgGCgGCGCGGCGggccgcCUccagcgccUCGCg -3'
miRNA:   3'- aCGG-CG-CGCGCCGCaaauaaGA--------AGCG- -5'
6500 5' -53.3 NC_001847.1 + 105815 0.66 0.948431
Target:  5'- aGCCGCGCGCGcuccaccGCGUcgcgggCcgCGCc -3'
miRNA:   3'- aCGGCGCGCGC-------CGCAaauaa-GaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 105758 0.66 0.960788
Target:  5'- gGCCGCcuccaGCGCGGCGgccgccUCggCGg -3'
miRNA:   3'- aCGGCG-----CGCGCCGCaaaua-AGaaGCg -5'
6500 5' -53.3 NC_001847.1 + 105683 0.75 0.58217
Target:  5'- gGCCGCGgGCGGCGc---UUCggcCGCg -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauAAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 105623 0.67 0.944409
Target:  5'- cGCCGCGCG-GGCGag----CUcUGCg -3'
miRNA:   3'- aCGGCGCGCgCCGCaaauaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 105179 0.76 0.490941
Target:  5'- gGCCGCGUcgGCGGCGgcggcUUUUCGCc -3'
miRNA:   3'- aCGGCGCG--CGCCGCaaauaAGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 105171 0.71 0.767264
Target:  5'- aGCCGCGCgaagGCGGCGUgcagGUacaugCU-CGCu -3'
miRNA:   3'- aCGGCGCG----CGCCGCAaa--UAa----GAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 105013 0.69 0.863962
Target:  5'- cGCCGCGCGUcGCGUaUA----UCGCc -3'
miRNA:   3'- aCGGCGCGCGcCGCAaAUaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 104932 0.7 0.839796
Target:  5'- gGgCGCGCGCGGC-----UUCggCGCg -3'
miRNA:   3'- aCgGCGCGCGCCGcaaauAAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 104911 0.67 0.946221
Target:  5'- gGCC-CGCGCGGCGgcgggc---CGCg -3'
miRNA:   3'- aCGGcGCGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 104738 0.73 0.665873
Target:  5'- cGCCGCgGCGCGGCGgccacUCgggcCGCc -3'
miRNA:   3'- aCGGCG-CGCGCCGCaaauaAGaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 104602 0.67 0.929017
Target:  5'- aGCCGCGCGacgagcuCGGCGacg--UCgcgcUCGCc -3'
miRNA:   3'- aCGGCGCGC-------GCCGCaaauaAGa---AGCG- -5'
6500 5' -53.3 NC_001847.1 + 104542 0.68 0.92013
Target:  5'- cGCCGCGcCGCGGCcagccgcg--CGCa -3'
miRNA:   3'- aCGGCGC-GCGCCGcaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 104523 0.67 0.941142
Target:  5'- cGCCGCguuugcggcgcuGCGCGGCGgccccggggccgCUaCGCg -3'
miRNA:   3'- aCGGCG------------CGCGCCGCaaauaa------GAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 104489 0.69 0.863962
Target:  5'- gGCCGuCGCGCGGCca--GUUC-UCGg -3'
miRNA:   3'- aCGGC-GCGCGCCGcaaaUAAGaAGCg -5'
6500 5' -53.3 NC_001847.1 + 104417 0.72 0.727669
Target:  5'- gGCCaGCGCGCGGCGcacug-CgcCGCg -3'
miRNA:   3'- aCGG-CGCGCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 104342 0.69 0.856117
Target:  5'- uUGCCGCGgcggcagaCGCGGCGgcg--UCcgCGCc -3'
miRNA:   3'- -ACGGCGC--------GCGCCGCaaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 104326 0.74 0.592583
Target:  5'- aGCCGCGCGUaGGCGgcc--UCggCGCg -3'
miRNA:   3'- aCGGCGCGCG-CCGCaaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 104211 0.66 0.956665
Target:  5'- cUGCCGguacuCGCGCGGCGgcacgggcacCGCg -3'
miRNA:   3'- -ACGGC-----GCGCGCCGCaaauaagaa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.