miRNA display CGI


Results 101 - 120 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 104157 0.66 0.957051
Target:  5'- cGCCGCgcccuGCGCGGCca-UGUcCUUgCGCc -3'
miRNA:   3'- aCGGCG-----CGCGCCGcaaAUAaGAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 104132 0.67 0.94395
Target:  5'- cGCgCGCGCGcCGGCaacgccggacaugGUgccg-CUUCGCu -3'
miRNA:   3'- aCG-GCGCGC-GCCG-------------CAaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 103917 0.69 0.884742
Target:  5'- gGCCGCGgGCGGCGccgc-----CGCg -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 103239 0.66 0.964294
Target:  5'- gGCCGCGgccgugaucUGCGGCGgca--UCcgCGCg -3'
miRNA:   3'- aCGGCGC---------GCGCCGCaaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 102984 0.72 0.697028
Target:  5'- cGCCGCGCacgccgucGCGGCGUgcg--CgggCGCg -3'
miRNA:   3'- aCGGCGCG--------CGCCGCAaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 102763 0.72 0.737722
Target:  5'- gUGCCGCGUGCGcGCGcc-GUUCU--GCa -3'
miRNA:   3'- -ACGGCGCGCGC-CGCaaaUAAGAagCG- -5'
6500 5' -53.3 NC_001847.1 + 102251 0.68 0.906234
Target:  5'- cGCuCGCGCGCGGCG---------CGCa -3'
miRNA:   3'- aCG-GCGCGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 101585 0.7 0.804842
Target:  5'- gGCCGCcucCGCGGCGUcugccgccUCUUCGg -3'
miRNA:   3'- aCGGCGc--GCGCCGCAaaua----AGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 101462 0.7 0.817404
Target:  5'- cUGCCGcCGCGCGGCcgcaagggCggCGCg -3'
miRNA:   3'- -ACGGC-GCGCGCCGcaaauaa-GaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 101264 0.66 0.947994
Target:  5'- gGCCaCGCGCGGCGgcgccucCUgcaagaagCGCg -3'
miRNA:   3'- aCGGcGCGCGCCGCaaauaa-GAa-------GCG- -5'
6500 5' -53.3 NC_001847.1 + 101051 0.68 0.916632
Target:  5'- cGCCGCGCGagccaCGGCGgccgccacgcgCUcCGCg -3'
miRNA:   3'- aCGGCGCGC-----GCCGCaaauaa-----GAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 101000 0.69 0.856117
Target:  5'- gUGCCGC-CGCGGCGgcaGUUaCUgcCGCc -3'
miRNA:   3'- -ACGGCGcGCGCCGCaaaUAA-GAa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 100862 0.69 0.868564
Target:  5'- gGCCGCgaGCGCGGCGcccagccgCcgCGCg -3'
miRNA:   3'- aCGGCG--CGCGCCGCaaauaa--GaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 100757 0.72 0.727669
Target:  5'- cUGCCGCG-GCGGCGgccgccgUUGUUUcggcCGCa -3'
miRNA:   3'- -ACGGCGCgCGCCGCa------AAUAAGaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 100657 0.69 0.863188
Target:  5'- gGCCGCGCugcuGCGGCGggggGUccccaggaggcuuUCU-CGCa -3'
miRNA:   3'- aCGGCGCG----CGCCGCaaa-UA-------------AGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 100479 0.72 0.745696
Target:  5'- cUGCCGCuGCGCGGCcgcccccUCggCGCg -3'
miRNA:   3'- -ACGGCG-CGCGCCGcaaaua-AGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 100438 0.66 0.967575
Target:  5'- cGCUccaGCGCGGCGcgcaagUCcUCGCg -3'
miRNA:   3'- aCGGcg-CGCGCCGCaaaua-AGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 100367 0.72 0.727669
Target:  5'- aGCCGCGCGCcGCGgccg--CggCGCg -3'
miRNA:   3'- aCGGCGCGCGcCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 100210 0.78 0.3852
Target:  5'- aUGCCGCGCagcugcgccagcgGCGGCGggacaucgaUCUUCGCg -3'
miRNA:   3'- -ACGGCGCG-------------CGCCGCaaaua----AGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 99690 0.7 0.818288
Target:  5'- uUGCgGCGCGCGGCGcgggccgccguaaagUCagCGCg -3'
miRNA:   3'- -ACGgCGCGCGCCGCaaaua----------AGaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.