miRNA display CGI


Results 121 - 140 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 99532 0.67 0.939705
Target:  5'- cGCCGCcgGCgGCGGCGUgaug----CGCa -3'
miRNA:   3'- aCGGCG--CG-CGCCGCAaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 99211 0.66 0.953079
Target:  5'- gGCCGCGCGgCGGCGcgc------CGCc -3'
miRNA:   3'- aCGGCGCGC-GCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 99169 0.67 0.921845
Target:  5'- gGCUGCGCGCgccuuGGCGcccucguggUCcUCGCg -3'
miRNA:   3'- aCGGCGCGCG-----CCGCaaaua----AGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 99107 0.66 0.964294
Target:  5'- aGCCGCGCGUaGUGcucg-UCcgCGCg -3'
miRNA:   3'- aCGGCGCGCGcCGCaaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 99009 0.68 0.911217
Target:  5'- gGcCCGCGUccGCGGCGcgcgcggCUUCGUg -3'
miRNA:   3'- aC-GGCGCG--CGCCGCaaauaa-GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 98809 0.72 0.741718
Target:  5'- cGCgGCGCGCGGCacgagcuuaaagUAggCUUCGUa -3'
miRNA:   3'- aCGgCGCGCGCCGcaa---------AUaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 98708 0.72 0.707312
Target:  5'- cGCCGCGCGCGccgcuacggcgcGCGUcgcagggUCUgcgCGCg -3'
miRNA:   3'- aCGGCGCGCGC------------CGCAaaua---AGAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 98621 0.66 0.961149
Target:  5'- cGCCuCGCGCaGCGUgcacaccgccgCUUCGUc -3'
miRNA:   3'- aCGGcGCGCGcCGCAaauaa------GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 98248 0.68 0.893091
Target:  5'- cGCCGUG-GCGGCGgggcagCguagUCGCc -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauaaGa---AGCG- -5'
6500 5' -53.3 NC_001847.1 + 98198 0.67 0.934753
Target:  5'- aGCCGUGCGaCGGCcgcggagcuccgGgaaaGUUCUUCuGCa -3'
miRNA:   3'- aCGGCGCGC-GCCG------------Caaa-UAAGAAG-CG- -5'
6500 5' -53.3 NC_001847.1 + 97474 0.66 0.964294
Target:  5'- gGCCGCGCGCuaagcccGCGgg----CUUgCGCg -3'
miRNA:   3'- aCGGCGCGCGc------CGCaaauaaGAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 97180 0.68 0.906234
Target:  5'- gGCgGCGCGCuGCGUagcggCUugcUCGCg -3'
miRNA:   3'- aCGgCGCGCGcCGCAaauaaGA---AGCG- -5'
6500 5' -53.3 NC_001847.1 + 97099 0.68 0.899784
Target:  5'- aGCCGCG-GCGGCGcg-GUUggcCGCg -3'
miRNA:   3'- aCGGCGCgCGCCGCaaaUAAgaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 96947 0.76 0.501773
Target:  5'- cGCCGCuaGCGGCGgcaaaguccgggacgUUGUUCU-CGCu -3'
miRNA:   3'- aCGGCGcgCGCCGCa--------------AAUAAGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 96947 0.67 0.934753
Target:  5'- -uCCGCGgGCGGCaggcgcUCUUCGUu -3'
miRNA:   3'- acGGCGCgCGCCGcaaauaAGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 96863 0.66 0.967575
Target:  5'- gGCgGUGgGCGGCGg----UCcgCGCu -3'
miRNA:   3'- aCGgCGCgCGCCGCaaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 96678 0.66 0.963954
Target:  5'- cGUCGUGCGCgggggccGGCGggUAcgCgUCGCc -3'
miRNA:   3'- aCGGCGCGCG-------CCGCaaAUaaGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 96557 0.66 0.953079
Target:  5'- aGCCGCGCGC-GCGg----UCUgcUgGCc -3'
miRNA:   3'- aCGGCGCGCGcCGCaaauaAGA--AgCG- -5'
6500 5' -53.3 NC_001847.1 + 94973 0.68 0.908745
Target:  5'- cGCCGCGCGCagcccccgcggcuuuGGCGcag---CUgcgCGCa -3'
miRNA:   3'- aCGGCGCGCG---------------CCGCaaauaaGAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 94629 0.67 0.92955
Target:  5'- cGUCGCGCGCagccgccgGGCaau--UUUUUCGCa -3'
miRNA:   3'- aCGGCGCGCG--------CCGcaaauAAGAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.