miRNA display CGI


Results 141 - 160 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 94363 0.72 0.737722
Target:  5'- cGCUG-GCGCGGCGgcg--UCUgccgCGCg -3'
miRNA:   3'- aCGGCgCGCGCCGCaaauaAGAa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 94238 0.71 0.786344
Target:  5'- cGCC-CGCGCGGCGccgUGgagCggcUCGCg -3'
miRNA:   3'- aCGGcGCGCGCCGCaa-AUaa-Ga--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 94209 0.79 0.348116
Target:  5'- cGCUGCGCGCGGCGgag---CU-CGCg -3'
miRNA:   3'- aCGGCGCGCGCCGCaaauaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 94172 0.66 0.957051
Target:  5'- cUGCUGgGCGCGGCcg-----CcUCGCg -3'
miRNA:   3'- -ACGGCgCGCGCCGcaaauaaGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 93755 0.67 0.931138
Target:  5'- gGCCGCGCggcugccgGCGGCGgcccggccgccgCUUgGCu -3'
miRNA:   3'- aCGGCGCG--------CGCCGCaaauaa------GAAgCG- -5'
6500 5' -53.3 NC_001847.1 + 93352 0.74 0.592583
Target:  5'- cGuaGCGCGCGGCGUUUAgcg-UUGUg -3'
miRNA:   3'- aCggCGCGCGCCGCAAAUaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 93341 0.66 0.948866
Target:  5'- cGCC-CGCGCGGUGcg---UCUUC-Ca -3'
miRNA:   3'- aCGGcGCGCGCCGCaaauaAGAAGcG- -5'
6500 5' -53.3 NC_001847.1 + 93307 0.73 0.655418
Target:  5'- gGCCGCGCGCGcGUGUgUAgg---CGCg -3'
miRNA:   3'- aCGGCGCGCGC-CGCAaAUaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 93126 0.69 0.886157
Target:  5'- cGCCGCGCcggcaCGGCGcag---CUUCGUu -3'
miRNA:   3'- aCGGCGCGc----GCCGCaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 92480 0.72 0.717529
Target:  5'- gGCCaGCGCgGCGGCGgcc--UCUUCGa -3'
miRNA:   3'- aCGG-CGCG-CGCCGCaaauaAGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 92200 0.71 0.776872
Target:  5'- -cCCGCGCGCGGCGUcggccgCUUgGg -3'
miRNA:   3'- acGGCGCGCGCCGCAaauaa-GAAgCg -5'
6500 5' -53.3 NC_001847.1 + 91816 0.66 0.954696
Target:  5'- cGCCGCGCGgcgauggcagcaCGGCagcgcgcgCUUCGUa -3'
miRNA:   3'- aCGGCGCGC------------GCCGcaaauaa-GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 91686 0.66 0.948866
Target:  5'- gGCUGCGgcUGCGGCucccg--CUUCGCu -3'
miRNA:   3'- aCGGCGC--GCGCCGcaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 91638 0.66 0.964294
Target:  5'- gGCUGCGgcUGCGGCucuug--CUUCGCc -3'
miRNA:   3'- aCGGCGC--GCGCCGcaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 91596 0.73 0.686687
Target:  5'- cGCgGCGCucGCGGCGgcgcUUCUccUCGCg -3'
miRNA:   3'- aCGgCGCG--CGCCGCaaauAAGA--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 90864 0.67 0.938735
Target:  5'- cGCCGCGcCGcCGGUGUgguaga-UCGCc -3'
miRNA:   3'- aCGGCGC-GC-GCCGCAaauaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 90704 0.69 0.876792
Target:  5'- gUGCCGCGCGCcGCGcccccgug-CGCg -3'
miRNA:   3'- -ACGGCGCGCGcCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 90560 0.66 0.958197
Target:  5'- cGCCGCGCGCgagGGCGacgacgagcCGCc -3'
miRNA:   3'- aCGGCGCGCG---CCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 90345 0.68 0.906234
Target:  5'- gUGCCGCGCuCGGCGcu--UUCgg-GCg -3'
miRNA:   3'- -ACGGCGCGcGCCGCaaauAAGaagCG- -5'
6500 5' -53.3 NC_001847.1 + 89966 0.76 0.481188
Target:  5'- cUGCCaGCGCGCGGCGgaagcgGUgCUgCGCg -3'
miRNA:   3'- -ACGG-CGCGCGCCGCaaa---UAaGAaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.