miRNA display CGI


Results 81 - 100 of 533 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 52605 0.72 0.717529
Target:  5'- aGcCCGCGgGCGGCGccUUUGacUUCggCGCg -3'
miRNA:   3'- aC-GGCGCgCGCCGC--AAAU--AAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 50066 0.72 0.726659
Target:  5'- gGuCCGCGCGCGGCGcggacccgggCGCg -3'
miRNA:   3'- aC-GGCGCGCGCCGCaaauaagaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 104417 0.72 0.727669
Target:  5'- gGCCaGCGCGCGGCGcacug-CgcCGCg -3'
miRNA:   3'- aCGG-CGCGCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 42028 0.72 0.737722
Target:  5'- gUGCCG-GCGCGGCGccUUUAUagcccgccccgCUUUGCg -3'
miRNA:   3'- -ACGGCgCGCGCCGC--AAAUAa----------GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 83256 0.72 0.747679
Target:  5'- gGCCGaaaGCGCGGCGg--GggCgggCGCa -3'
miRNA:   3'- aCGGCg--CGCGCCGCaaaUaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 120199 0.71 0.75753
Target:  5'- gGCCGCGCgaGCGGCGcccg--CU-CGCa -3'
miRNA:   3'- aCGGCGCG--CGCCGCaaauaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 5883 0.71 0.764357
Target:  5'- cGCUGCGCGCagGGCGgccgcgccgUCGCa -3'
miRNA:   3'- aCGGCGCGCG--CCGCaaauaaga-AGCG- -5'
6500 5' -53.3 NC_001847.1 + 91596 0.73 0.686687
Target:  5'- cGCgGCGCucGCGGCGgcgcUUCUccUCGCg -3'
miRNA:   3'- aCGgCGCG--CGCCGCaaauAAGA--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 5675 0.73 0.686687
Target:  5'- cGUCGCGCGCGGCGg-----CggcCGCc -3'
miRNA:   3'- aCGGCGCGCGCCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 120085 0.73 0.675258
Target:  5'- aGCCGCGCGgGGCGggagauaaagCGCc -3'
miRNA:   3'- aCGGCGCGCgCCGCaaauaagaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 10087 0.74 0.631313
Target:  5'- cGCCGCGCGCgggagcacaagcGGCGgggaaagccgcCUUCGCg -3'
miRNA:   3'- aCGGCGCGCG------------CCGCaaauaa-----GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 28005 0.73 0.644944
Target:  5'- cUGCaGCGCGCGGCGUgccgcgCUUacgaGCg -3'
miRNA:   3'- -ACGgCGCGCGCCGCAaauaa-GAAg---CG- -5'
6500 5' -53.3 NC_001847.1 + 93307 0.73 0.655418
Target:  5'- gGCCGCGCGCGcGUGUgUAgg---CGCg -3'
miRNA:   3'- aCGGCGCGCGC-CGCAaAUaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 30922 0.73 0.665873
Target:  5'- cGCCgGCgGUGCGGCGgaggc-CUUCGCa -3'
miRNA:   3'- aCGG-CG-CGCGCCGCaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 89930 0.73 0.665873
Target:  5'- gGCCGCGCucGCGGCGgcg---CU-CGCg -3'
miRNA:   3'- aCGGCGCG--CGCCGCaaauaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 104738 0.73 0.665873
Target:  5'- cGCCGCgGCGCGGCGgccacUCgggcCGCc -3'
miRNA:   3'- aCGGCG-CGCGCCGCaaauaAGaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 40181 0.73 0.666917
Target:  5'- gGCUGCGCGCGGCGgaacggc--CGCc -3'
miRNA:   3'- aCGGCGCGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 82905 0.73 0.666917
Target:  5'- cGCgGCGCGCGGCGcccgggggcuuuUUCU-CGCu -3'
miRNA:   3'- aCGgCGCGCGCCGCaaau--------AAGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 43721 0.73 0.674217
Target:  5'- cGCUGCGCGCGGaCGUggugg---CGCa -3'
miRNA:   3'- aCGGCGCGCGCC-GCAaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 2648 0.71 0.767264
Target:  5'- cGCCGCuuGCGGCGc-----CUUCGCc -3'
miRNA:   3'- aCGGCGcgCGCCGCaaauaaGAAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.