miRNA display CGI


Results 121 - 140 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 133584 0.7 0.812956
Target:  5'- cGCCGUGCuggccucGCGGCGcg---UCUUCGg -3'
miRNA:   3'- aCGGCGCG-------CGCCGCaaauaAGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 45545 0.7 0.813849
Target:  5'- gUGCCGCGCagcgcguucaccGCGGCGgcg-----UCGCg -3'
miRNA:   3'- -ACGGCGCG------------CGCCGCaaauaagaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 75946 0.71 0.786344
Target:  5'- cGCCGCcacaCGCGGCGUgUGcUCgUUGCa -3'
miRNA:   3'- aCGGCGc---GCGCCGCAaAUaAGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 15302 0.71 0.786344
Target:  5'- gGCUGCGCGCGgGCGUg-------CGCg -3'
miRNA:   3'- aCGGCGCGCGC-CGCAaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 92200 0.71 0.776872
Target:  5'- -cCCGCGCGCGGCGUcggccgCUUgGg -3'
miRNA:   3'- acGGCGCGCGCCGCAaauaa-GAAgCg -5'
6500 5' -53.3 NC_001847.1 + 5675 0.73 0.686687
Target:  5'- cGUCGCGCGCGGCGg-----CggcCGCc -3'
miRNA:   3'- aCGGCGCGCGCCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 91596 0.73 0.686687
Target:  5'- cGCgGCGCucGCGGCGgcgcUUCUccUCGCg -3'
miRNA:   3'- aCGgCGCG--CGCCGCaaauAAGA--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 120780 0.73 0.686687
Target:  5'- cGaCCGCGCGCuGGCGgc-GUUCccCGCa -3'
miRNA:   3'- aC-GGCGCGCG-CCGCaaaUAAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 130231 0.73 0.686687
Target:  5'- uUGCCGCcgGCGCGGuCGgug--UCgUUCGCa -3'
miRNA:   3'- -ACGGCG--CGCGCC-GCaaauaAG-AAGCG- -5'
6500 5' -53.3 NC_001847.1 + 133967 0.72 0.707312
Target:  5'- gGCCGCG-GCGGUGgcc-UUCUgCGCg -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauAAGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 52605 0.72 0.717529
Target:  5'- aGcCCGCGgGCGGCGccUUUGacUUCggCGCg -3'
miRNA:   3'- aC-GGCGCgCGCCGC--AAAU--AAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 50066 0.72 0.726659
Target:  5'- gGuCCGCGCGCGGCGcggacccgggCGCg -3'
miRNA:   3'- aC-GGCGCGCGCCGCaaauaagaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 55341 0.7 0.813849
Target:  5'- gGCCGCuCGCGGCGgug---CUgaaCGCg -3'
miRNA:   3'- aCGGCGcGCGCCGCaaauaaGAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 104417 0.72 0.727669
Target:  5'- gGCCaGCGCGCGGCGcacug-CgcCGCg -3'
miRNA:   3'- aCGG-CGCGCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 42028 0.72 0.737722
Target:  5'- gUGCCG-GCGCGGCGccUUUAUagcccgccccgCUUUGCg -3'
miRNA:   3'- -ACGGCgCGCGCCGC--AAAUAa----------GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 83256 0.72 0.747679
Target:  5'- gGCCGaaaGCGCGGCGg--GggCgggCGCa -3'
miRNA:   3'- aCGGCg--CGCGCCGCaaaUaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 120199 0.71 0.75753
Target:  5'- gGCCGCGCgaGCGGCGcccg--CU-CGCa -3'
miRNA:   3'- aCGGCGCG--CGCCGCaaauaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 5883 0.71 0.764357
Target:  5'- cGCUGCGCGCagGGCGgccgcgccgUCGCa -3'
miRNA:   3'- aCGGCGCGCG--CCGCaaauaaga-AGCG- -5'
6500 5' -53.3 NC_001847.1 + 2648 0.71 0.767264
Target:  5'- cGCCGCuuGCGGCGc-----CUUCGCc -3'
miRNA:   3'- aCGGCGcgCGCCGCaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 53880 0.71 0.773045
Target:  5'- cGCCGCGgggGCGGCGggccccccgUCcUCGCg -3'
miRNA:   3'- aCGGCGCg--CGCCGCaaaua----AGaAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.