miRNA display CGI


Results 61 - 80 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 33333 0.66 0.957051
Target:  5'- gGCgGCGCGCuGCGUgacggUGggCcccUCGCa -3'
miRNA:   3'- aCGgCGCGCGcCGCAa----AUaaGa--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 69750 0.66 0.955885
Target:  5'- aGCCucccgGUGCGCGGCGgucaagug-CGCg -3'
miRNA:   3'- aCGG-----CGCGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 39067 0.66 0.967575
Target:  5'- gGCuCGCGCaGCGG-GUUgagGUUCaUUCGg -3'
miRNA:   3'- aCG-GCGCG-CGCCgCAAa--UAAG-AAGCg -5'
6500 5' -53.3 NC_001847.1 + 62156 0.66 0.967575
Target:  5'- gGCCGCG-GCGGCGUaggc----CGCc -3'
miRNA:   3'- aCGGCGCgCGCCGCAaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 103239 0.66 0.964294
Target:  5'- gGCCGCGgccgugaucUGCGGCGgca--UCcgCGCg -3'
miRNA:   3'- aCGGCGC---------GCGCCGCaaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 99107 0.66 0.964294
Target:  5'- aGCCGCGCGUaGUGcucg-UCcgCGCg -3'
miRNA:   3'- aCGGCGCGCGcCGCaaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 123579 0.66 0.961149
Target:  5'- cGCCGCGaGCGGgGccggaccgggCUUUGCa -3'
miRNA:   3'- aCGGCGCgCGCCgCaaauaa----GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 73559 0.66 0.960788
Target:  5'- gGCCuuugaGUGCGCGGUGcugugUCUgcaccUCGCg -3'
miRNA:   3'- aCGG-----CGCGCGCCGCaaauaAGA-----AGCG- -5'
6500 5' -53.3 NC_001847.1 + 75277 0.66 0.959322
Target:  5'- gGCCGCGCGC-GCGgcccucggCgacCGCg -3'
miRNA:   3'- aCGGCGCGCGcCGCaaauaa--Gaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 73820 0.66 0.957051
Target:  5'- cGCCGCGCuGCaGCGg-----CUgCGCg -3'
miRNA:   3'- aCGGCGCG-CGcCGCaaauaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 74513 0.67 0.939705
Target:  5'- cGCCGCGCGCuGGaCGagacg-CggCGCu -3'
miRNA:   3'- aCGGCGCGCG-CC-GCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 74985 0.67 0.939705
Target:  5'- cGCuCGCggGCGUGGCGcaccccgcGUUCUUCGg -3'
miRNA:   3'- aCG-GCG--CGCGCCGCaaa-----UAAGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 123828 0.66 0.953079
Target:  5'- aGCCGCcCGCcggccucggcgGGCGcgcccaUCUUCGCg -3'
miRNA:   3'- aCGGCGcGCG-----------CCGCaaaua-AGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 14338 0.66 0.953079
Target:  5'- gGCCGgGCGUGGUGg-----CggCGCc -3'
miRNA:   3'- aCGGCgCGCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 30578 0.66 0.948866
Target:  5'- -uCCGCgGCGCGGUGgagUAccUCUgcgCGCg -3'
miRNA:   3'- acGGCG-CGCGCCGCaa-AUa-AGAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 66210 0.66 0.948866
Target:  5'- cGCCGCccaGCGGCGgc---UCgggCGCg -3'
miRNA:   3'- aCGGCGcg-CGCCGCaaauaAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 54577 0.66 0.948866
Target:  5'- gUGaCGCGCGCGaGCGa-UGUUCgggggCGCc -3'
miRNA:   3'- -ACgGCGCGCGC-CGCaaAUAAGaa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 2098 0.67 0.946221
Target:  5'- gGCC-CGCGCGGCGgcgggc---CGCg -3'
miRNA:   3'- aCGGcGCGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 52699 0.67 0.944409
Target:  5'- gGCCGUGCGCGGgGUUg--------- -3'
miRNA:   3'- aCGGCGCGCGCCgCAAauaagaagcg -5'
6500 5' -53.3 NC_001847.1 + 29407 0.67 0.944409
Target:  5'- gGCCGCGCugGCGGCGcggaccgUGgccccgCU-CGCg -3'
miRNA:   3'- aCGGCGCG--CGCCGCaa-----AUaa----GAaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.