miRNA display CGI


Results 121 - 140 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 98621 0.66 0.961149
Target:  5'- cGCCuCGCGCaGCGUgcacaccgccgCUUCGUc -3'
miRNA:   3'- aCGGcGCGCGcCGCAaauaa------GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 22401 0.66 0.960788
Target:  5'- gGCCGCG-GCGaGCGUgc--UCgucCGCg -3'
miRNA:   3'- aCGGCGCgCGC-CGCAaauaAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 107641 0.68 0.916041
Target:  5'- cGCCGCG-GCGGCGgccgaggccUCUgcCGCc -3'
miRNA:   3'- aCGGCGCgCGCCGCaaaua----AGAa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 1729 0.68 0.92013
Target:  5'- cGCCGCGcCGCGGCcagccgcg--CGCa -3'
miRNA:   3'- aCGGCGC-GCGCCGcaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 88554 0.67 0.924097
Target:  5'- gGCCGCGC-CGGCGggg---CUgaCGCc -3'
miRNA:   3'- aCGGCGCGcGCCGCaaauaaGAa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 1344 0.66 0.957051
Target:  5'- cGCCGCgcccuGCGCGGCca-UGUcCUUgCGCc -3'
miRNA:   3'- aCGGCG-----CGCGCCGcaaAUAaGAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 91816 0.66 0.954696
Target:  5'- cGCCGCGCGgcgauggcagcaCGGCagcgcgcgCUUCGUa -3'
miRNA:   3'- aCGGCGCGC------------GCCGcaaauaa-GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 123828 0.66 0.953079
Target:  5'- aGCCGCcCGCcggccucggcgGGCGcgcccaUCUUCGCg -3'
miRNA:   3'- aCGGCGcGCG-----------CCGCaaaua-AGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 28613 0.66 0.951002
Target:  5'- gGCCGCGCGCuacgcGGCGgccgcggggccCGCg -3'
miRNA:   3'- aCGGCGCGCG-----CCGCaaauaagaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 30578 0.66 0.948866
Target:  5'- -uCCGCgGCGCGGUGgagUAccUCUgcgCGCg -3'
miRNA:   3'- acGGCG-CGCGCCGCaa-AUa-AGAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 29373 0.66 0.948866
Target:  5'- cGCUGCGCGCcgaGGCGgccg--CcgCGCu -3'
miRNA:   3'- aCGGCGCGCG---CCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 54577 0.66 0.948866
Target:  5'- gUGaCGCGCGCGaGCGa-UGUUCgggggCGCc -3'
miRNA:   3'- -ACgGCGCGCGC-CGCaaAUAAGaa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 129480 0.67 0.944409
Target:  5'- cGCCGCGCGCGaCGgcg------CGCa -3'
miRNA:   3'- aCGGCGCGCGCcGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 52699 0.67 0.944409
Target:  5'- gGCCGUGCGCGGgGUUg--------- -3'
miRNA:   3'- aCGGCGCGCGCCgCAAauaagaagcg -5'
6500 5' -53.3 NC_001847.1 + 104132 0.67 0.94395
Target:  5'- cGCgCGCGCGcCGGCaacgccggacaugGUgccg-CUUCGCu -3'
miRNA:   3'- aCG-GCGCGC-GCCG-------------CAaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 74985 0.67 0.939705
Target:  5'- cGCuCGCggGCGUGGCGcaccccgcGUUCUUCGg -3'
miRNA:   3'- aCG-GCG--CGCGCCGCaaa-----UAAGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 42736 0.67 0.939221
Target:  5'- gGCCGCGCggGCGGCGgggcggaca-GCa -3'
miRNA:   3'- aCGGCGCG--CGCCGCaaauaagaagCG- -5'
6500 5' -53.3 NC_001847.1 + 52558 0.67 0.934753
Target:  5'- cGCCGC-CGCGaGCG------CUUCGCg -3'
miRNA:   3'- aCGGCGcGCGC-CGCaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 118652 0.67 0.930082
Target:  5'- gGCCGCGCGCgggaGGCGcaagagaggugUCcgCGCu -3'
miRNA:   3'- aCGGCGCGCG----CCGCaaaua------AGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 36982 0.67 0.92955
Target:  5'- gGgCGCGcCGCGGCGUgcug-CUgcuuaacaccUCGCu -3'
miRNA:   3'- aCgGCGC-GCGCCGCAaauaaGA----------AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.