miRNA display CGI


Results 1 - 20 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 132186 0.66 0.948866
Target:  5'- cGCUGCGCGCcgaGGCGgccg--CcgCGCu -3'
miRNA:   3'- aCGGCGCGCG---CCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 105966 0.66 0.948866
Target:  5'- cGCCgGCgGCGCGGCGggccgcCUccagcgccUCGCg -3'
miRNA:   3'- aCGG-CG-CGCGCCGCaaauaaGA--------AGCG- -5'
6500 5' -53.3 NC_001847.1 + 15344 0.66 0.948866
Target:  5'- -uCCGCGCGCaGUGccg---CUUCGCu -3'
miRNA:   3'- acGGCGCGCGcCGCaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 4201 0.66 0.95184
Target:  5'- gGCCGCGCGCaGGCagccaaagccCUgCGCg -3'
miRNA:   3'- aCGGCGCGCG-CCGcaaauaa---GAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 4977 0.66 0.948866
Target:  5'- cGCC-CGCGgGGuCGUgacgUCcUCGCa -3'
miRNA:   3'- aCGGcGCGCgCC-GCAaauaAGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 105815 0.66 0.948431
Target:  5'- aGCCGCGCGCGcuccaccGCGUcgcgggCcgCGCc -3'
miRNA:   3'- aCGGCGCGCGC-------CGCAaauaa-GaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 15988 0.66 0.948866
Target:  5'- cGCCGCccCGCGGCGgccg--CggCGCc -3'
miRNA:   3'- aCGGCGc-GCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 83059 0.66 0.947554
Target:  5'- gGCCGCgGCGCGGCcgaagag---CGCa -3'
miRNA:   3'- aCGGCG-CGCGCCGcaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 59312 0.66 0.948866
Target:  5'- gUGCCaGgGCGCGGCGccgg--CggCGCc -3'
miRNA:   3'- -ACGG-CgCGCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 16048 0.66 0.948866
Target:  5'- cGCCGCccCGCGGCGgccg--CggCGCc -3'
miRNA:   3'- aCGGCGc-GCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 33124 0.66 0.947994
Target:  5'- cGaCCGCG-GCGGCGgcgagcgCUUcCGCg -3'
miRNA:   3'- aC-GGCGCgCGCCGCaaauaa-GAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 77038 0.66 0.950155
Target:  5'- cGCCGCGCcgcagaaguaguaGCGGCGcggcacccgCUgcggCGCg -3'
miRNA:   3'- aCGGCGCG-------------CGCCGCaaauaa---GAa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 133391 0.66 0.948866
Target:  5'- -uCCGCgGCGCGGUGgagUAccUCUgcgCGCg -3'
miRNA:   3'- acGGCG-CGCGCCGCaa-AUa-AGAa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 68480 0.66 0.952255
Target:  5'- cGCCGCGCG-GGCGcaag-----CGCg -3'
miRNA:   3'- aCGGCGCGCgCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 91686 0.66 0.948866
Target:  5'- gGCUGCGgcUGCGGCucccg--CUUCGCu -3'
miRNA:   3'- aCGGCGC--GCGCCGcaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 75866 0.66 0.953079
Target:  5'- gUGuuGCGCGCGGCGg--------CGUc -3'
miRNA:   3'- -ACggCGCGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 131426 0.66 0.951002
Target:  5'- gGCCGCGCGCuacgcGGCGgccgcggggccCGCg -3'
miRNA:   3'- aCGGCGCGCG-----CCGCaaauaagaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 96557 0.66 0.953079
Target:  5'- aGCCGCGCGC-GCGg----UCUgcUgGCc -3'
miRNA:   3'- aCGGCGCGCGcCGCaaauaAGA--AgCG- -5'
6500 5' -53.3 NC_001847.1 + 31103 0.66 0.948866
Target:  5'- gGCCGggcaGCGCGGUGgcaugcCUUCGg -3'
miRNA:   3'- aCGGCg---CGCGCCGCaaauaaGAAGCg -5'
6500 5' -53.3 NC_001847.1 + 32941 0.66 0.946668
Target:  5'- -cCCGCGCGCGGUGcccgcggacagCGCg -3'
miRNA:   3'- acGGCGCGCGCCGCaaauaagaa--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.