miRNA display CGI


Results 21 - 40 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 119602 0.66 0.965302
Target:  5'- gGCCGCGCGCgcaccGGCGccagcagccCGCg -3'
miRNA:   3'- aCGGCGCGCG-----CCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 39113 0.66 0.964968
Target:  5'- cGCUGCGCGacagggcuacguacaCGGCGUUgagccgcagguUUCcgCGCg -3'
miRNA:   3'- aCGGCGCGC---------------GCCGCAAau---------AAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 14458 0.66 0.964294
Target:  5'- gGCCGCGCugcuCGGCGUgcgcUCcaaCGCc -3'
miRNA:   3'- aCGGCGCGc---GCCGCAaauaAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 97474 0.66 0.964294
Target:  5'- gGCCGCGCGCuaagcccGCGgg----CUUgCGCg -3'
miRNA:   3'- aCGGCGCGCGc------CGCaaauaaGAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 36133 0.66 0.964294
Target:  5'- aGCCGCGCGCGccGCGga-------CGCg -3'
miRNA:   3'- aCGGCGCGCGC--CGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 5738 0.66 0.964294
Target:  5'- cUGCC-CGCGgGGCG---GUUCgcCGCc -3'
miRNA:   3'- -ACGGcGCGCgCCGCaaaUAAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 103239 0.66 0.964294
Target:  5'- gGCCGCGgccgugaucUGCGGCGgca--UCcgCGCg -3'
miRNA:   3'- aCGGCGC---------GCGCCGCaaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 99107 0.66 0.964294
Target:  5'- aGCCGCGCGUaGUGcucg-UCcgCGCg -3'
miRNA:   3'- aCGGCGCGCGcCGCaaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 108048 0.66 0.964294
Target:  5'- gGgCGCGCGCGGCaaaggGUUUgccUGCg -3'
miRNA:   3'- aCgGCGCGCGCCGcaaa-UAAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 82075 0.66 0.964294
Target:  5'- aGCCGgGCuCGGCGUcUGggCcaagCGCg -3'
miRNA:   3'- aCGGCgCGcGCCGCAaAUaaGaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 15548 0.66 0.964294
Target:  5'- cGCCgGUGCGCGcGCGgccg-UCgggcCGCg -3'
miRNA:   3'- aCGG-CGCGCGC-CGCaaauaAGaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 5235 0.66 0.964294
Target:  5'- gGgCGCGCGCGGCaaaggGUUUgccUGCg -3'
miRNA:   3'- aCgGCGCGCGCCGcaaa-UAAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 74338 0.66 0.964294
Target:  5'- cUGCCGCagGCGCGcGCGcugGUggcgCGCg -3'
miRNA:   3'- -ACGGCG--CGCGC-CGCaaaUAagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 12924 0.66 0.964294
Target:  5'- cGCCGCGgggGCGcGCGUg---UCgUCGUg -3'
miRNA:   3'- aCGGCGCg--CGC-CGCAaauaAGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 91638 0.66 0.964294
Target:  5'- gGCUGCGgcUGCGGCucuug--CUUCGCc -3'
miRNA:   3'- aCGGCGC--GCGCCGcaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 63275 0.66 0.964294
Target:  5'- gGCCGCGCGCucGCGgccgcUUCcacCGCu -3'
miRNA:   3'- aCGGCGCGCGc-CGCaaau-AAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 108551 0.66 0.964294
Target:  5'- cUGCC-CGCGgGGCG---GUUCgcCGCc -3'
miRNA:   3'- -ACGGcGCGCgCCGCaaaUAAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 83505 0.66 0.964294
Target:  5'- cGCCGCgGCGCuGCGUgc---CUUCcuGCg -3'
miRNA:   3'- aCGGCG-CGCGcCGCAaauaaGAAG--CG- -5'
6500 5' -53.3 NC_001847.1 + 96678 0.66 0.963954
Target:  5'- cGUCGUGCGCgggggccGGCGggUAcgCgUCGCc -3'
miRNA:   3'- aCGGCGCGCG-------CCGCaaAUaaGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 29979 0.66 0.962919
Target:  5'- cGCCGCcuucGCGCGGCugcagggCUaugUCGCc -3'
miRNA:   3'- aCGGCG----CGCGCCGcaaauaaGA---AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.