miRNA display CGI


Results 81 - 100 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 47865 0.66 0.992414
Target:  5'- uGCUGCGCGGGcgcGCgCAgcgcGCGcgcGCCCg -3'
miRNA:   3'- -CGGCGCGCUC---UGgGUaaauUGU---UGGG- -5'
6501 3' -51.1 NC_001847.1 + 113764 0.66 0.992414
Target:  5'- cGUCGC-UGAGAgCCGcccgaGGCGGCCCg -3'
miRNA:   3'- -CGGCGcGCUCUgGGUaaa--UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 619 0.66 0.992414
Target:  5'- aGCgGCGCGcGGCCCGc---GCcuCCCc -3'
miRNA:   3'- -CGgCGCGCuCUGGGUaaauUGuuGGG- -5'
6501 3' -51.1 NC_001847.1 + 108257 0.66 0.992414
Target:  5'- cCUGCGUGuuGCCCGacggcggUGGCGGCCg -3'
miRNA:   3'- cGGCGCGCucUGGGUaa-----AUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 33976 0.66 0.990036
Target:  5'- aCCGCGCcccGACCCcggcccCGGCCCc -3'
miRNA:   3'- cGGCGCGcu-CUGGGuaaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 62907 0.66 0.991289
Target:  5'- gGUgGCGCGggugcucgGGGCCCGcg-GGCGGCUCc -3'
miRNA:   3'- -CGgCGCGC--------UCUGGGUaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 19555 0.66 0.991289
Target:  5'- aGCCGCacGCGAucgacGCCCGcgaucgccGCGGCCCg -3'
miRNA:   3'- -CGGCG--CGCUc----UGGGUaaau----UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 81240 0.66 0.992199
Target:  5'- uCCGgGCGGGGCCgucgcgagGACGggggGCCCg -3'
miRNA:   3'- cGGCgCGCUCUGGguaaa---UUGU----UGGG- -5'
6501 3' -51.1 NC_001847.1 + 45219 0.66 0.992199
Target:  5'- cGCCGcCGCGAGcgcgGCCUcgcgcggcACAACCUc -3'
miRNA:   3'- -CGGC-GCGCUC----UGGGuaaau---UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 13129 0.66 0.990553
Target:  5'- gGCCGCGaucAGcACCCcggucgcguuGCGACCCa -3'
miRNA:   3'- -CGGCGCgc-UC-UGGGuaaau-----UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 16160 0.66 0.992414
Target:  5'- gGCCgGgGCGAccGCCCcgUUGGCcgcgGACCCc -3'
miRNA:   3'- -CGG-CgCGCUc-UGGGuaAAUUG----UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 63024 0.66 0.991289
Target:  5'- cGCCGCGCGcgaAGGCCgGgaccACGGCg- -3'
miRNA:   3'- -CGGCGCGC---UCUGGgUaaauUGUUGgg -5'
6501 3' -51.1 NC_001847.1 + 60967 0.66 0.989634
Target:  5'- cGCCGCGCGgcauGGGCCCcacgccgagaGGCgCCg -3'
miRNA:   3'- -CGGCGCGC----UCUGGGuaaauug---UUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 73150 0.66 0.987111
Target:  5'- cCCGCGCcgcucuucGGGCCCAUUau---GCCCg -3'
miRNA:   3'- cGGCGCGc-------UCUGGGUAAauuguUGGG- -5'
6501 3' -51.1 NC_001847.1 + 11441 0.66 0.992414
Target:  5'- uGCCGUGCGAccccgcgccagcGGCuaCCGUgcgcgUGGCgAGCCCc -3'
miRNA:   3'- -CGGCGCGCU------------CUG--GGUAa----AUUG-UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 76492 0.66 0.992414
Target:  5'- cGCCugcaGCGCcuGGGAgCCCGUguucGCGGCCUa -3'
miRNA:   3'- -CGG----CGCG--CUCU-GGGUAaau-UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 104761 0.66 0.987111
Target:  5'- gGCCGC-CGGcGCUCGUccucgccgGGCGGCCCg -3'
miRNA:   3'- -CGGCGcGCUcUGGGUAaa------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 10874 0.66 0.990036
Target:  5'- --gGCGCGGGcGCCCAggcaGACcGCCUg -3'
miRNA:   3'- cggCGCGCUC-UGGGUaaa-UUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 132205 0.66 0.987111
Target:  5'- cGCCGCGCugGAGGCggCCGcgcUGGCGGCgCg -3'
miRNA:   3'- -CGGCGCG--CUCUG--GGUaa-AUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 120327 0.66 0.992414
Target:  5'- aCCGCGCGcaGGGCgCCGc---GCAGCuCCg -3'
miRNA:   3'- cGGCGCGC--UCUG-GGUaaauUGUUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.