Results 101 - 120 of 662 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 120327 | 0.66 | 0.992414 |
Target: 5'- aCCGCGCGcaGGGCgCCGc---GCAGCuCCg -3' miRNA: 3'- cGGCGCGC--UCUG-GGUaaauUGUUG-GG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 64764 | 0.66 | 0.992414 |
Target: 5'- gGCCaGCGCGAGcucgcGCCCc---GGCGcCCCc -3' miRNA: 3'- -CGG-CGCGCUC-----UGGGuaaaUUGUuGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 30222 | 0.66 | 0.988646 |
Target: 5'- aGCCGCGCGcgcccGGGCCgAggUGcGCGugUCg -3' miRNA: 3'- -CGGCGCGC-----UCUGGgUaaAU-UGUugGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 102144 | 0.66 | 0.992414 |
Target: 5'- uCCGCGCGA--CCaCGgcggcGCGGCCCg -3' miRNA: 3'- cGGCGCGCUcuGG-GUaaau-UGUUGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 46857 | 0.66 | 0.987111 |
Target: 5'- aGCCGCGUc-GGCCCAgcaGGCGAagcgcucccCCCg -3' miRNA: 3'- -CGGCGCGcuCUGGGUaaaUUGUU---------GGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 97974 | 0.66 | 0.990036 |
Target: 5'- cCCgGCGCGAGGCUg--UUGACcGCCa -3' miRNA: 3'- cGG-CGCGCUCUGGguaAAUUGuUGGg -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 61331 | 0.66 | 0.990036 |
Target: 5'- gGCgGgGCGGGcgcgccuaGCCCAccggcaGGCAGCCCc -3' miRNA: 3'- -CGgCgCGCUC--------UGGGUaaa---UUGUUGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 24101 | 0.66 | 0.992414 |
Target: 5'- aGCUgGCGCGGGuCCCAg--GGCucgcACUCg -3' miRNA: 3'- -CGG-CGCGCUCuGGGUaaaUUGu---UGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 37671 | 0.66 | 0.992414 |
Target: 5'- aGCC-CGCG-GGCUUAgcgcGCGGCCCu -3' miRNA: 3'- -CGGcGCGCuCUGGGUaaauUGUUGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 63024 | 0.66 | 0.991289 |
Target: 5'- cGCCGCGCGcgaAGGCCgGgaccACGGCg- -3' miRNA: 3'- -CGGCGCGC---UCUGGgUaaauUGUUGgg -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 62907 | 0.66 | 0.991289 |
Target: 5'- gGUgGCGCGggugcucgGGGCCCGcg-GGCGGCUCc -3' miRNA: 3'- -CGgCGCGC--------UCUGGGUaaaUUGUUGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 78459 | 0.66 | 0.991289 |
Target: 5'- cGCCGCGCGccAGGuacgucUCCA---AGCuGCCCg -3' miRNA: 3'- -CGGCGCGC--UCU------GGGUaaaUUGuUGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 104761 | 0.66 | 0.987111 |
Target: 5'- gGCCGC-CGGcGCUCGUccucgccgGGCGGCCCg -3' miRNA: 3'- -CGGCGcGCUcUGGGUAaa------UUGUUGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 62748 | 0.66 | 0.990036 |
Target: 5'- cCCGCGuCGGGGCCCGcguccACcACCa -3' miRNA: 3'- cGGCGC-GCUCUGGGUaaau-UGuUGGg -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 98767 | 0.66 | 0.990036 |
Target: 5'- cGgCGCGCGcuGCCCGggccgcGGCGGCgCCg -3' miRNA: 3'- -CgGCGCGCucUGGGUaaa---UUGUUG-GG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 13129 | 0.66 | 0.990553 |
Target: 5'- gGCCGCGaucAGcACCCcggucgcguuGCGACCCa -3' miRNA: 3'- -CGGCGCgc-UC-UGGGuaaau-----UGUUGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 46334 | 0.66 | 0.990036 |
Target: 5'- gGCCGCccGCGGGGCCgCGUc-GGCGGCa- -3' miRNA: 3'- -CGGCG--CGCUCUGG-GUAaaUUGUUGgg -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 38255 | 0.66 | 0.989219 |
Target: 5'- cCCGCGCGAGcacggcggucccucCCCAgcgcgGACcgccGCCCa -3' miRNA: 3'- cGGCGCGCUCu-------------GGGUaaa--UUGu---UGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 131609 | 0.66 | 0.992414 |
Target: 5'- cGCCGCGCucgcGGCCguaGUcgGccACGGCCCg -3' miRNA: 3'- -CGGCGCGcu--CUGGg--UAaaU--UGUUGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 5444 | 0.66 | 0.992414 |
Target: 5'- cCUGCGUGuuGCCCGacggcggUGGCGGCCg -3' miRNA: 3'- cGGCGCGCucUGGGUaa-----AUUGUUGGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home