miRNA display CGI


Results 141 - 160 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 79102 0.67 0.981324
Target:  5'- cGCCGCGcCGugccuguggaagaAGGCCCGccgccagGACGuGCCCg -3'
miRNA:   3'- -CGGCGC-GC-------------UCUGGGUaaa----UUGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 92807 0.67 0.983565
Target:  5'- cGCCGCGCacacGGGcGCCCAc--AGCAcgaaacacucGCCCu -3'
miRNA:   3'- -CGGCGCG----CUC-UGGGUaaaUUGU----------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 87445 0.67 0.983565
Target:  5'- uGCUGCGCGc-GCUCA----ACGGCCCc -3'
miRNA:   3'- -CGGCGCGCucUGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 36373 0.67 0.983565
Target:  5'- cGCCGC-CGcGGCCCG---GGCAGCgCg -3'
miRNA:   3'- -CGGCGcGCuCUGGGUaaaUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 48836 0.67 0.983565
Target:  5'- uGCCGCGCgGGGGCgCCu-----CGGCCg -3'
miRNA:   3'- -CGGCGCG-CUCUG-GGuaaauuGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 76223 0.67 0.983565
Target:  5'- -gCGCGCGugccGACCUcgUcc-CGACCCg -3'
miRNA:   3'- cgGCGCGCu---CUGGGuaAauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 12717 0.67 0.98542
Target:  5'- uGCCGCuGCccaggauuuugGAGGgCCGggu-GCGGCCCa -3'
miRNA:   3'- -CGGCG-CG-----------CUCUgGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 26690 0.67 0.98542
Target:  5'- cGCCG-GCGGGcUCCAgcc-GCAGCUCg -3'
miRNA:   3'- -CGGCgCGCUCuGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 62488 0.67 0.98542
Target:  5'- cGCCG-GCGGGcgGCCgCGgggUGGCGGCCa -3'
miRNA:   3'- -CGGCgCGCUC--UGG-GUaa-AUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 38854 0.67 0.983565
Target:  5'- uGCCGcCGCc-GGCCCcgaguACGGCCCc -3'
miRNA:   3'- -CGGC-GCGcuCUGGGuaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 65161 0.67 0.98542
Target:  5'- -aCGuCGCGGGACCUccugccucuggaGUUUAugGucgcGCCCg -3'
miRNA:   3'- cgGC-GCGCUCUGGG------------UAAAUugU----UGGG- -5'
6501 3' -51.1 NC_001847.1 + 120256 0.67 0.981537
Target:  5'- -gCGCGCGGacGGCCCcg-UAGCGuucgcuguccACCCg -3'
miRNA:   3'- cgGCGCGCU--CUGGGuaaAUUGU----------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 9914 0.67 0.981537
Target:  5'- gGCCGC-CGAGuacGCCCGgcaGGCGGCUg -3'
miRNA:   3'- -CGGCGcGCUC---UGGGUaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 10318 0.67 0.981537
Target:  5'- uGCUGCgGCGgcaaccauGGACCCGU---ACGACgCCa -3'
miRNA:   3'- -CGGCG-CGC--------UCUGGGUAaauUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 35915 0.67 0.981537
Target:  5'- cGgCGCGUGGGAgCCuuugUGGCGGCgCg -3'
miRNA:   3'- -CgGCGCGCUCUgGGuaa-AUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 80481 0.67 0.981537
Target:  5'- gGCCGCGCuc--CCCGUUccGCAGCgCg -3'
miRNA:   3'- -CGGCGCGcucuGGGUAAauUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 88666 0.67 0.981537
Target:  5'- cGCUGCGaCGuggaAGGCCCuguacgUAAguGCCCu -3'
miRNA:   3'- -CGGCGC-GC----UCUGGGuaa---AUUguUGGG- -5'
6501 3' -51.1 NC_001847.1 + 98171 0.67 0.981537
Target:  5'- cGCCGCgGCGc-GCCCAguccucuaGGCAGCCg -3'
miRNA:   3'- -CGGCG-CGCucUGGGUaaa-----UUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 103986 0.67 0.981537
Target:  5'- gGCCGCGCaGaAGGCCaccgccGCGGCCg -3'
miRNA:   3'- -CGGCGCG-C-UCUGGguaaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 105365 0.67 0.981537
Target:  5'- cGCCGC-CG-GGCCgG---GGCGGCCCu -3'
miRNA:   3'- -CGGCGcGCuCUGGgUaaaUUGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.