miRNA display CGI


Results 81 - 100 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 83705 0.73 0.787006
Target:  5'- cGUCGCGCGuGuGgCUAUUUAACgAGCCCg -3'
miRNA:   3'- -CGGCGCGCuC-UgGGUAAAUUG-UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 74168 0.73 0.787006
Target:  5'- cGCCucucgGCGUGGGGCCCAUgccgcGCGGCgCCu -3'
miRNA:   3'- -CGG-----CGCGCUCUGGGUAaau--UGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 65442 0.73 0.787006
Target:  5'- aGCCGCGCGccgcGGACCgAgcgc-CGGCCCc -3'
miRNA:   3'- -CGGCGCGC----UCUGGgUaaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 131163 0.73 0.787006
Target:  5'- gGCCGCGCGcccGGGCCCcc--GGC-GCCCu -3'
miRNA:   3'- -CGGCGCGC---UCUGGGuaaaUUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 37228 0.73 0.787006
Target:  5'- gGCgGCGCGGacGACCCGgcgGACGGCgCg -3'
miRNA:   3'- -CGgCGCGCU--CUGGGUaaaUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 132727 0.73 0.783208
Target:  5'- cGCCGCG-GGGGCCCcucgggggagGACGACUCu -3'
miRNA:   3'- -CGGCGCgCUCUGGGuaaa------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 93755 0.73 0.805627
Target:  5'- gGCCGCGCGGcuGCCgGc--GGCGGCCCg -3'
miRNA:   3'- -CGGCGCGCUc-UGGgUaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 134905 0.73 0.805627
Target:  5'- cGCCgggcgucgggGCGCGAGGCCCGggcucgGGCCCc -3'
miRNA:   3'- -CGG----------CGCGCUCUGGGUaaauugUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 19012 0.73 0.808364
Target:  5'- gGCCGCGCGccccAGcGCCCGgccgaaaggccgagaAGCAGCCCg -3'
miRNA:   3'- -CGGCGCGC----UC-UGGGUaaa------------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 94702 0.73 0.823577
Target:  5'- uGUCGUGCcAGACgCCuucaUUAACAACCCc -3'
miRNA:   3'- -CGGCGCGcUCUG-GGua--AAUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 88335 0.73 0.823577
Target:  5'- aGCCGCGCG-GGCCUGUgcucgucuGCcguAGCCCu -3'
miRNA:   3'- -CGGCGCGCuCUGGGUAaau-----UG---UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 82499 0.73 0.823577
Target:  5'- gGCCGUGCGGGcGgCCAUcggcaacgUGGCGAUCCg -3'
miRNA:   3'- -CGGCGCGCUC-UgGGUAa-------AUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 3028 0.73 0.796395
Target:  5'- gGCCGCGcCGAGcaGCUCG----GCGGCCCg -3'
miRNA:   3'- -CGGCGC-GCUC--UGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 46718 0.73 0.787006
Target:  5'- cGCCGaauaaaGCGAGACCCcgcacacACAGCCg -3'
miRNA:   3'- -CGGCg-----CGCUCUGGGuaaau--UGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 116921 0.73 0.81469
Target:  5'- aGCaCGCGcCGAGAgCCGc---ACAGCCCg -3'
miRNA:   3'- -CG-GCGC-GCUCUgGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 28350 0.73 0.787006
Target:  5'- gGCCGCGCGcccGGGCCCcc--GGC-GCCCu -3'
miRNA:   3'- -CGGCGCGC---UCUGGGuaaaUUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 19026 0.73 0.787006
Target:  5'- uUCGCGCGuGACCCcgccGGCAgGCCCg -3'
miRNA:   3'- cGGCGCGCuCUGGGuaaaUUGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 59426 0.73 0.81469
Target:  5'- cGCUGCGCcccGGGCCUGgcUGACGACCa -3'
miRNA:   3'- -CGGCGCGc--UCUGGGUaaAUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 3506 0.73 0.81469
Target:  5'- aGCCGCGCGAGcUUCGUgu-ACGGgCCg -3'
miRNA:   3'- -CGGCGCGCUCuGGGUAaauUGUUgGG- -5'
6501 3' -51.1 NC_001847.1 + 33891 0.73 0.813792
Target:  5'- cGCCGCGCGuGGCCgCGggcgUgcaggaccgccugUGGCAGCCUu -3'
miRNA:   3'- -CGGCGCGCuCUGG-GUa---A-------------AUUGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.