miRNA display CGI


Results 101 - 120 of 662 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 82499 0.73 0.823577
Target:  5'- gGCCGUGCGGGcGgCCAUcggcaacgUGGCGAUCCg -3'
miRNA:   3'- -CGGCGCGCUC-UgGGUAa-------AUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 118247 0.73 0.823577
Target:  5'- cCCGCGCGAGACC-----GGCGACgCa -3'
miRNA:   3'- cGGCGCGCUCUGGguaaaUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 94702 0.73 0.823577
Target:  5'- uGUCGUGCcAGACgCCuucaUUAACAACCCc -3'
miRNA:   3'- -CGGCGCGcUCUG-GGua--AAUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 88335 0.73 0.823577
Target:  5'- aGCCGCGCG-GGCCUGUgcucgucuGCcguAGCCCu -3'
miRNA:   3'- -CGGCGCGCuCUGGGUAaau-----UG---UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 33730 0.73 0.797326
Target:  5'- aGCCGCGgcgggagaCGAGACCCccgAUUgccggcggcgccgcgGGCAGCCCc -3'
miRNA:   3'- -CGGCGC--------GCUCUGGG---UAAa--------------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 65723 0.73 0.796395
Target:  5'- cGCCGCGCuGAG-CCgCAgg-AACAGCgCCg -3'
miRNA:   3'- -CGGCGCG-CUCuGG-GUaaaUUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 79399 0.73 0.823577
Target:  5'- gGCCGCGCGggcgcgagccGGACCaccgUGGC-GCCCg -3'
miRNA:   3'- -CGGCGCGC----------UCUGGguaaAUUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 93755 0.73 0.805627
Target:  5'- gGCCGCGCGGcuGCCgGc--GGCGGCCCg -3'
miRNA:   3'- -CGGCGCGCUc-UGGgUaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 134905 0.73 0.805627
Target:  5'- cGCCgggcgucgggGCGCGAGGCCCGggcucgGGCCCc -3'
miRNA:   3'- -CGG----------CGCGCUCUGGGUaaauugUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 19012 0.73 0.808364
Target:  5'- gGCCGCGCGccccAGcGCCCGgccgaaaggccgagaAGCAGCCCg -3'
miRNA:   3'- -CGGCGCGC----UC-UGGGUaaa------------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 33891 0.73 0.813792
Target:  5'- cGCCGCGCGuGGCCgCGggcgUgcaggaccgccugUGGCAGCCUu -3'
miRNA:   3'- -CGGCGCGCuCUGG-GUa---A-------------AUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 68887 0.73 0.81469
Target:  5'- aGUCGcCGCGAGcaugcucgGCCCGgagaguGCAGCCCu -3'
miRNA:   3'- -CGGC-GCGCUC--------UGGGUaaau--UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 19026 0.73 0.787006
Target:  5'- uUCGCGCGuGACCCcgccGGCAgGCCCg -3'
miRNA:   3'- cGGCGCGCuCUGGGuaaaUUGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 28350 0.73 0.787006
Target:  5'- gGCCGCGCGcccGGGCCCcc--GGC-GCCCu -3'
miRNA:   3'- -CGGCGCGC---UCUGGGuaaaUUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 46718 0.73 0.787006
Target:  5'- cGCCGaauaaaGCGAGACCCcgcacacACAGCCg -3'
miRNA:   3'- -CGGCg-----CGCUCUGGGuaaau--UGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 3028 0.73 0.796395
Target:  5'- gGCCGCGcCGAGcaGCUCG----GCGGCCCg -3'
miRNA:   3'- -CGGCGC-GCUC--UGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 52094 0.73 0.796395
Target:  5'- gGCCGCGcCGcGGCCCAagcgcacUAGCGGCCg -3'
miRNA:   3'- -CGGCGC-GCuCUGGGUaa-----AUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 23783 0.72 0.840785
Target:  5'- uGCCcggGCGCGAGgucGCCCAgcgcGGCGGCCa -3'
miRNA:   3'- -CGG---CGCGCUC---UGGGUaaa-UUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 58732 0.72 0.832278
Target:  5'- cGCCGCGgGGuGCCCccgccGCGGCCCc -3'
miRNA:   3'- -CGGCGCgCUcUGGGuaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 3909 0.72 0.832278
Target:  5'- aGCCaGCGCGGGcGCCgGUUgcGC-GCCCg -3'
miRNA:   3'- -CGG-CGCGCUC-UGGgUAAauUGuUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.