miRNA display CGI


Results 121 - 140 of 662 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 101713 0.72 0.832278
Target:  5'- cCCGCGacgcCGAGcGCCCGUUUAugGCGGCCa -3'
miRNA:   3'- cGGCGC----GCUC-UGGGUAAAU--UGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 107148 0.72 0.832278
Target:  5'- cGCCGCGCGcugcagcgcGGCCCAgc--GCGGCgCCa -3'
miRNA:   3'- -CGGCGCGCu--------CUGGGUaaauUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 21008 0.72 0.872715
Target:  5'- aCCGCGCGcGGCUgugcgGGCGACCCu -3'
miRNA:   3'- cGGCGCGCuCUGGguaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 27447 0.72 0.872715
Target:  5'- aGCgGCGCgGGGGCCCugcc-GCuGCCCg -3'
miRNA:   3'- -CGgCGCG-CUCUGGGuaaauUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 58732 0.72 0.832278
Target:  5'- cGCCGCGgGGuGCCCccgccGCGGCCCc -3'
miRNA:   3'- -CGGCGCgCUcUGGGuaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 52429 0.72 0.872715
Target:  5'- cCCGCGCGuggagcacauGGACCUGgacgacugGGCGGCCCu -3'
miRNA:   3'- cGGCGCGC----------UCUGGGUaaa-----UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 132269 0.72 0.872715
Target:  5'- cGCgGCGCGGcGGCCCGcgcguCGGCCUg -3'
miRNA:   3'- -CGgCGCGCU-CUGGGUaaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 130260 0.72 0.872715
Target:  5'- aGCgGCGCgGGGGCCCugcc-GCuGCCCg -3'
miRNA:   3'- -CGgCGCG-CUCUGGGuaaauUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 133750 0.72 0.865061
Target:  5'- cGCCGCGCGAGuACC-----GGCAGCgCg -3'
miRNA:   3'- -CGGCGCGCUC-UGGguaaaUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 53062 0.72 0.865061
Target:  5'- cCCGCGCuuGGCCCA---GACGccgaGCCCg -3'
miRNA:   3'- cGGCGCGcuCUGGGUaaaUUGU----UGGG- -5'
6501 3' -51.1 NC_001847.1 + 31960 0.72 0.840785
Target:  5'- uGCCGCgGCGgcggcGGGCCCcgUgGACGccGCCCu -3'
miRNA:   3'- -CGGCG-CGC-----UCUGGGuaAaUUGU--UGGG- -5'
6501 3' -51.1 NC_001847.1 + 23783 0.72 0.840785
Target:  5'- uGCCcggGCGCGAGgucGCCCAgcgcGGCGGCCa -3'
miRNA:   3'- -CGG---CGCGCUC---UGGGUaaa-UUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 8596 0.72 0.840785
Target:  5'- aGCCGCGCGAGcgucaGCCgCAgc--GCAAgCCCc -3'
miRNA:   3'- -CGGCGCGCUC-----UGG-GUaaauUGUU-GGG- -5'
6501 3' -51.1 NC_001847.1 + 22383 0.72 0.839099
Target:  5'- gGCCccCGCGGGGCCgGggucgcgacgGACAACCCg -3'
miRNA:   3'- -CGGc-GCGCUCUGGgUaaa-------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 106722 0.72 0.832278
Target:  5'- aGCCaGCGCGGGcGCCgGUUgcGC-GCCCg -3'
miRNA:   3'- -CGG-CGCGCUC-UGGgUAAauUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 56681 0.72 0.873468
Target:  5'- -aCGCGCGAG-UCCGUgcgcacgaggugcaGGCAGCCCa -3'
miRNA:   3'- cgGCGCGCUCuGGGUAaa------------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 122700 0.72 0.872715
Target:  5'- cGCCGCGCGcgcuGugCCGgcgccuuGgAGCCCg -3'
miRNA:   3'- -CGGCGCGCu---CugGGUaaau---UgUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 29456 0.72 0.872715
Target:  5'- cGCgGCGCGGcGGCCCGcgcguCGGCCUg -3'
miRNA:   3'- -CGgCGCGCU-CUGGGUaaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 123453 0.72 0.872715
Target:  5'- uGCCGgGCuuGGCCCGgc-GACGGCCg -3'
miRNA:   3'- -CGGCgCGcuCUGGGUaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 73090 0.72 0.872715
Target:  5'- -aCGCGCGcauccGGCCCAUUga--GGCCCg -3'
miRNA:   3'- cgGCGCGCu----CUGGGUAAauugUUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.