miRNA display CGI


Results 141 - 160 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 126277 0.72 0.857184
Target:  5'- cGUCG-GCGAGuuCCUAUggaAGCAACCCa -3'
miRNA:   3'- -CGGCgCGCUCu-GGGUAaa-UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 135034 0.72 0.856384
Target:  5'- gGCCgggGCGCGgggcgccGGACCCAgg-GGCGgaGCCCa -3'
miRNA:   3'- -CGG---CGCGC-------UCUGGGUaaaUUGU--UGGG- -5'
6501 3' -51.1 NC_001847.1 + 31960 0.72 0.840785
Target:  5'- uGCCGCgGCGgcggcGGGCCCcgUgGACGccGCCCu -3'
miRNA:   3'- -CGGCG-CGC-----UCUGGGuaAaUUGU--UGGG- -5'
6501 3' -51.1 NC_001847.1 + 23783 0.72 0.840785
Target:  5'- uGCCcggGCGCGAGgucGCCCAgcgcGGCGGCCa -3'
miRNA:   3'- -CGG---CGCGCUC---UGGGUaaa-UUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 8596 0.72 0.840785
Target:  5'- aGCCGCGCGAGcgucaGCCgCAgc--GCAAgCCCc -3'
miRNA:   3'- -CGGCGCGCUC-----UGG-GUaaauUGUU-GGG- -5'
6501 3' -51.1 NC_001847.1 + 54413 0.72 0.865061
Target:  5'- cGCCGcCGCGGuuGGCCUc---GGCGGCCCg -3'
miRNA:   3'- -CGGC-GCGCU--CUGGGuaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 133750 0.72 0.865061
Target:  5'- cGCCGCGCGAGuACC-----GGCAGCgCg -3'
miRNA:   3'- -CGGCGCGCUC-UGGguaaaUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 130260 0.72 0.872715
Target:  5'- aGCgGCGCgGGGGCCCugcc-GCuGCCCg -3'
miRNA:   3'- -CGgCGCG-CUCUGGGuaaauUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 58732 0.72 0.832278
Target:  5'- cGCCGCGgGGuGCCCccgccGCGGCCCc -3'
miRNA:   3'- -CGGCGCgCUcUGGGuaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 101713 0.72 0.832278
Target:  5'- cCCGCGacgcCGAGcGCCCGUUUAugGCGGCCa -3'
miRNA:   3'- cGGCGC----GCUC-UGGGUAAAU--UGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 53967 0.72 0.832278
Target:  5'- cGCCGcCGCGAG-CCCuccgAGCGGCgCg -3'
miRNA:   3'- -CGGC-GCGCUCuGGGuaaaUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 71875 0.72 0.837406
Target:  5'- gGCCgcgaGCGCGcGGCCCGUUguugucuuuccCAGCCCg -3'
miRNA:   3'- -CGG----CGCGCuCUGGGUAAauu--------GUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 41402 0.72 0.839943
Target:  5'- aGCCGCGCGgccuccagcugccGGAUCCGcUUGACGAUUg -3'
miRNA:   3'- -CGGCGCGC-------------UCUGGGUaAAUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 52627 0.72 0.840785
Target:  5'- gGCCGCGCGGaucGCCaCGUUgccgaUGGCcGCCCg -3'
miRNA:   3'- -CGGCGCGCUc--UGG-GUAA-----AUUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 32052 0.72 0.840785
Target:  5'- cCCGCGCG-GGCUCG----GCGGCCCc -3'
miRNA:   3'- cGGCGCGCuCUGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 75170 0.72 0.841624
Target:  5'- cGCCGCGuCGGGACCaucgucacguACGACgCCa -3'
miRNA:   3'- -CGGCGC-GCUCUGGguaaau----UGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 22383 0.72 0.839099
Target:  5'- gGCCccCGCGGGGCCgGggucgcgacgGACAACCCg -3'
miRNA:   3'- -CGGc-GCGCUCUGGgUaaa-------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 52429 0.72 0.872715
Target:  5'- cCCGCGCGuggagcacauGGACCUGgacgacugGGCGGCCCu -3'
miRNA:   3'- cGGCGCGC----------UCUGGGUaaa-----UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 132269 0.72 0.872715
Target:  5'- cGCgGCGCGGcGGCCCGcgcguCGGCCUg -3'
miRNA:   3'- -CGgCGCGCU-CUGGGUaaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 21008 0.72 0.872715
Target:  5'- aCCGCGCGcGGCUgugcgGGCGACCCu -3'
miRNA:   3'- cGGCGCGCuCUGGguaaaUUGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.