miRNA display CGI


Results 161 - 180 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 32221 0.72 0.856384
Target:  5'- gGCCgggGCGCGgggcgccGGACCCAgg-GGCGgaGCCCa -3'
miRNA:   3'- -CGG---CGCGC-------UCUGGGUaaaUUGU--UGGG- -5'
6501 3' -51.1 NC_001847.1 + 28456 0.72 0.849089
Target:  5'- cGCCGCGCGAcGGgCCGccgccgcugGAgGGCCCg -3'
miRNA:   3'- -CGGCGCGCU-CUgGGUaaa------UUgUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 53593 0.72 0.849089
Target:  5'- aGCUGCGCGGGGCCgGcgagcuCGGCCg -3'
miRNA:   3'- -CGGCGCGCUCUGGgUaaauu-GUUGGg -5'
6501 3' -51.1 NC_001847.1 + 129520 0.72 0.865061
Target:  5'- gGCgCGCGCGGGACCgCGgcgccCAcGCCCg -3'
miRNA:   3'- -CG-GCGCGCUCUGG-GUaaauuGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 105623 0.72 0.865061
Target:  5'- cGCCGCGCGGGcgaGCUCu----GCGGCCg -3'
miRNA:   3'- -CGGCGCGCUC---UGGGuaaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 101357 0.72 0.857184
Target:  5'- cGCCGCGCGcAGcCCCGcga---AGCCCu -3'
miRNA:   3'- -CGGCGCGC-UCuGGGUaaauugUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 18549 0.72 0.857184
Target:  5'- gGCCGUaguaGCGGGGCUCGgugacCGGCCCg -3'
miRNA:   3'- -CGGCG----CGCUCUGGGUaaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 23464 0.72 0.857184
Target:  5'- cGUCG-GCGAGuuCCUAUggaAGCAACCCa -3'
miRNA:   3'- -CGGCgCGCUCu-GGGUAaa-UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 62381 0.72 0.848268
Target:  5'- cGCCGCGCc--GCCCGacgcgucUUUAGCGcACCCg -3'
miRNA:   3'- -CGGCGCGcucUGGGU-------AAAUUGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 130260 0.72 0.872715
Target:  5'- aGCgGCGCgGGGGCCCugcc-GCuGCCCg -3'
miRNA:   3'- -CGgCGCG-CUCUGGGuaaauUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 21008 0.72 0.872715
Target:  5'- aCCGCGCGcGGCUgugcgGGCGACCCu -3'
miRNA:   3'- cGGCGCGCuCUGGguaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 132269 0.72 0.872715
Target:  5'- cGCgGCGCGGcGGCCCGcgcguCGGCCUg -3'
miRNA:   3'- -CGgCGCGCU-CUGGGUaaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 52429 0.72 0.872715
Target:  5'- cCCGCGCGuggagcacauGGACCUGgacgacugGGCGGCCCu -3'
miRNA:   3'- cGGCGCGC----------UCUGGGUaaa-----UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 131971 0.71 0.880139
Target:  5'- cGCCuGcCGCGAGGCgCuggaGGCGGCCCg -3'
miRNA:   3'- -CGG-C-GCGCUCUGgGuaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 117352 0.71 0.907434
Target:  5'- cGCC-CGCuGGGGCCCGUccugaaccUAGCGGCCUc -3'
miRNA:   3'- -CGGcGCG-CUCUGGGUAa-------AUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 32312 0.71 0.887327
Target:  5'- cGCCGCGgaaCGGGACCCGcuggAACAcgcgaucgcggGCCUg -3'
miRNA:   3'- -CGGCGC---GCUCUGGGUaaa-UUGU-----------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 56849 0.71 0.907434
Target:  5'- cGCCGCGCcgucugcGCCCG----GCGGCCCg -3'
miRNA:   3'- -CGGCGCGcuc----UGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 11369 0.71 0.909946
Target:  5'- gGCCGCGCGgcgcgaucaacuacgGGACgacuccagaggCCAUguuGCGGCCCc -3'
miRNA:   3'- -CGGCGCGC---------------UCUG-----------GGUAaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 57115 0.71 0.907434
Target:  5'- cGCCGCGCGcauguugggGGACgCCAUggccgUGACGuacuGCCa -3'
miRNA:   3'- -CGGCGCGC---------UCUG-GGUAa----AUUGU----UGGg -5'
6501 3' -51.1 NC_001847.1 + 81419 0.71 0.907434
Target:  5'- cGCCGCGCGccGAUCCGccccGCGAgCCg -3'
miRNA:   3'- -CGGCGCGCu-CUGGGUaaauUGUUgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.