Results 81 - 100 of 662 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 131163 | 0.73 | 0.787006 |
Target: 5'- gGCCGCGCGcccGGGCCCcc--GGC-GCCCu -3' miRNA: 3'- -CGGCGCGC---UCUGGGuaaaUUGuUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 37228 | 0.73 | 0.787006 |
Target: 5'- gGCgGCGCGGacGACCCGgcgGACGGCgCg -3' miRNA: 3'- -CGgCGCGCU--CUGGGUaaaUUGUUGgG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 15050 | 0.73 | 0.787006 |
Target: 5'- aGCUGUGCGAG-CgCCAUcUGaccgGCGGCCCg -3' miRNA: 3'- -CGGCGCGCUCuG-GGUAaAU----UGUUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 19026 | 0.73 | 0.787006 |
Target: 5'- uUCGCGCGuGACCCcgccGGCAgGCCCg -3' miRNA: 3'- cGGCGCGCuCUGGGuaaaUUGU-UGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 28350 | 0.73 | 0.787006 |
Target: 5'- gGCCGCGCGcccGGGCCCcc--GGC-GCCCu -3' miRNA: 3'- -CGGCGCGC---UCUGGGuaaaUUGuUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 46718 | 0.73 | 0.787006 |
Target: 5'- cGCCGaauaaaGCGAGACCCcgcacacACAGCCg -3' miRNA: 3'- -CGGCg-----CGCUCUGGGuaaau--UGUUGGg -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 99352 | 0.73 | 0.796395 |
Target: 5'- gGCCGgGCGGaucuuGGCCCcu---GCGACCCa -3' miRNA: 3'- -CGGCgCGCU-----CUGGGuaaauUGUUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 52094 | 0.73 | 0.796395 |
Target: 5'- gGCCGCGcCGcGGCCCAagcgcacUAGCGGCCg -3' miRNA: 3'- -CGGCGC-GCuCUGGGUaa-----AUUGUUGGg -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 9635 | 0.73 | 0.796395 |
Target: 5'- cGCCGCGCc-GGCCCGccgcucgAGCAGCCg -3' miRNA: 3'- -CGGCGCGcuCUGGGUaaa----UUGUUGGg -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 105841 | 0.73 | 0.796395 |
Target: 5'- gGCCGCGcCGAGcaGCUCG----GCGGCCCg -3' miRNA: 3'- -CGGCGC-GCUC--UGGGUaaauUGUUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 65723 | 0.73 | 0.796395 |
Target: 5'- cGCCGCGCuGAG-CCgCAgg-AACAGCgCCg -3' miRNA: 3'- -CGGCGCG-CUCuGG-GUaaaUUGUUG-GG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 3028 | 0.73 | 0.796395 |
Target: 5'- gGCCGCGcCGAGcaGCUCG----GCGGCCCg -3' miRNA: 3'- -CGGCGC-GCUC--UGGGUaaauUGUUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 33730 | 0.73 | 0.797326 |
Target: 5'- aGCCGCGgcgggagaCGAGACCCccgAUUgccggcggcgccgcgGGCAGCCCc -3' miRNA: 3'- -CGGCGC--------GCUCUGGG---UAAa--------------UUGUUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 93755 | 0.73 | 0.805627 |
Target: 5'- gGCCGCGCGGcuGCCgGc--GGCGGCCCg -3' miRNA: 3'- -CGGCGCGCUc-UGGgUaaaUUGUUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 86322 | 0.73 | 0.805627 |
Target: 5'- cCCGCGCGgcaAGGCCCG---GACAuCCCc -3' miRNA: 3'- cGGCGCGC---UCUGGGUaaaUUGUuGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 134905 | 0.73 | 0.805627 |
Target: 5'- cGCCgggcgucgggGCGCGAGGCCCGggcucgGGCCCc -3' miRNA: 3'- -CGG----------CGCGCUCUGGGUaaauugUUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 89314 | 0.73 | 0.805627 |
Target: 5'- uGCCGCccaGCGAGugGCCCGggcGGCAGCUCc -3' miRNA: 3'- -CGGCG---CGCUC--UGGGUaaaUUGUUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 32092 | 0.73 | 0.805627 |
Target: 5'- cGCCgggcgucgggGCGCGAGGCCCGggcucgGGCCCc -3' miRNA: 3'- -CGG----------CGCGCUCUGGGUaaauugUUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 19012 | 0.73 | 0.808364 |
Target: 5'- gGCCGCGCGccccAGcGCCCGgccgaaaggccgagaAGCAGCCCg -3' miRNA: 3'- -CGGCGCGC----UC-UGGGUaaa------------UUGUUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 33891 | 0.73 | 0.813792 |
Target: 5'- cGCCGCGCGuGGCCgCGggcgUgcaggaccgccugUGGCAGCCUu -3' miRNA: 3'- -CGGCGCGCuCUGG-GUa---A-------------AUUGUUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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