miRNA display CGI


Results 121 - 140 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 106722 0.72 0.832278
Target:  5'- aGCCaGCGCGGGcGCCgGUUgcGC-GCCCg -3'
miRNA:   3'- -CGG-CGCGCUC-UGGgUAAauUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 107148 0.72 0.832278
Target:  5'- cGCCGCGCGcugcagcgcGGCCCAgc--GCGGCgCCa -3'
miRNA:   3'- -CGGCGCGCu--------CUGGGUaaauUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 53967 0.72 0.832278
Target:  5'- cGCCGcCGCGAG-CCCuccgAGCGGCgCg -3'
miRNA:   3'- -CGGC-GCGCUCuGGGuaaaUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 71875 0.72 0.837406
Target:  5'- gGCCgcgaGCGCGcGGCCCGUUguugucuuuccCAGCCCg -3'
miRNA:   3'- -CGG----CGCGCuCUGGGUAAauu--------GUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 22383 0.72 0.839099
Target:  5'- gGCCccCGCGGGGCCgGggucgcgacgGACAACCCg -3'
miRNA:   3'- -CGGc-GCGCUCUGGgUaaa-------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 41402 0.72 0.839943
Target:  5'- aGCCGCGCGgccuccagcugccGGAUCCGcUUGACGAUUg -3'
miRNA:   3'- -CGGCGCGC-------------UCUGGGUaAAUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 77476 0.72 0.840785
Target:  5'- cGCCGgGCGcccGGCCCGgcccgcCGGCCCg -3'
miRNA:   3'- -CGGCgCGCu--CUGGGUaaauu-GUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 31960 0.72 0.840785
Target:  5'- uGCCGCgGCGgcggcGGGCCCcgUgGACGccGCCCu -3'
miRNA:   3'- -CGGCG-CGC-----UCUGGGuaAaUUGU--UGGG- -5'
6501 3' -51.1 NC_001847.1 + 23783 0.72 0.840785
Target:  5'- uGCCcggGCGCGAGgucGCCCAgcgcGGCGGCCa -3'
miRNA:   3'- -CGG---CGCGCUC---UGGGUaaa-UUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 8596 0.72 0.840785
Target:  5'- aGCCGCGCGAGcgucaGCCgCAgc--GCAAgCCCc -3'
miRNA:   3'- -CGGCGCGCUC-----UGG-GUaaauUGUU-GGG- -5'
6501 3' -51.1 NC_001847.1 + 65052 0.72 0.840785
Target:  5'- uGCCGCgGUGuGGCCCGUguccuACAuCCCc -3'
miRNA:   3'- -CGGCG-CGCuCUGGGUAaau--UGUuGGG- -5'
6501 3' -51.1 NC_001847.1 + 32052 0.72 0.840785
Target:  5'- cCCGCGCG-GGCUCG----GCGGCCCc -3'
miRNA:   3'- cGGCGCGCuCUGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 134865 0.72 0.840785
Target:  5'- cCCGCGCG-GGCUCG----GCGGCCCc -3'
miRNA:   3'- cGGCGCGCuCUGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 52627 0.72 0.840785
Target:  5'- gGCCGCGCGGaucGCCaCGUUgccgaUGGCcGCCCg -3'
miRNA:   3'- -CGGCGCGCUc--UGG-GUAA-----AUUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 75170 0.72 0.841624
Target:  5'- cGCCGCGuCGGGACCaucgucacguACGACgCCa -3'
miRNA:   3'- -CGGCGC-GCUCUGGguaaau----UGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 34945 0.72 0.848268
Target:  5'- aGCUGCGCGgcaucgcguggugGGACgCGUUuucccUGGCGGCCCc -3'
miRNA:   3'- -CGGCGCGC-------------UCUGgGUAA-----AUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 62381 0.72 0.848268
Target:  5'- cGCCGCGCc--GCCCGacgcgucUUUAGCGcACCCg -3'
miRNA:   3'- -CGGCGCGcucUGGGU-------AAAUUGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 80651 0.72 0.849089
Target:  5'- cGCuCGCGgGAGACCCGgcgccgGGgAGCCg -3'
miRNA:   3'- -CG-GCGCgCUCUGGGUaaa---UUgUUGGg -5'
6501 3' -51.1 NC_001847.1 + 28456 0.72 0.849089
Target:  5'- cGCCGCGCGAcGGgCCGccgccgcugGAgGGCCCg -3'
miRNA:   3'- -CGGCGCGCU-CUgGGUaaa------UUgUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 53593 0.72 0.849089
Target:  5'- aGCUGCGCGGGGCCgGcgagcuCGGCCg -3'
miRNA:   3'- -CGGCGCGCUCUGGgUaaauu-GUUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.