miRNA display CGI


Results 141 - 160 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 123330 0.72 0.849089
Target:  5'- cCCGCGCGcuGugCCGUcUGACGgaaagcACCCg -3'
miRNA:   3'- cGGCGCGCu-CugGGUAaAUUGU------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 39843 0.72 0.849089
Target:  5'- cGCCGCGCcugGAGGCgCCA----GCGGCCg -3'
miRNA:   3'- -CGGCGCG---CUCUG-GGUaaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 131269 0.72 0.849089
Target:  5'- cGCCGCGCGAcGGgCCGccgccgcugGAgGGCCCg -3'
miRNA:   3'- -CGGCGCGCU-CUgGGUaaa------UUgUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 134668 0.72 0.849089
Target:  5'- --gGCGCGGGcACCCAU--GACGGCgCCg -3'
miRNA:   3'- cggCGCGCUC-UGGGUAaaUUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 135034 0.72 0.856384
Target:  5'- gGCCgggGCGCGgggcgccGGACCCAgg-GGCGgaGCCCa -3'
miRNA:   3'- -CGG---CGCGC-------UCUGGGUaaaUUGU--UGGG- -5'
6501 3' -51.1 NC_001847.1 + 32221 0.72 0.856384
Target:  5'- gGCCgggGCGCGgggcgccGGACCCAgg-GGCGgaGCCCa -3'
miRNA:   3'- -CGG---CGCGC-------UCUGGGUaaaUUGU--UGGG- -5'
6501 3' -51.1 NC_001847.1 + 101357 0.72 0.857184
Target:  5'- cGCCGCGCGcAGcCCCGcga---AGCCCu -3'
miRNA:   3'- -CGGCGCGC-UCuGGGUaaauugUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 18549 0.72 0.857184
Target:  5'- gGCCGUaguaGCGGGGCUCGgugacCGGCCCg -3'
miRNA:   3'- -CGGCG----CGCUCUGGGUaaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 23464 0.72 0.857184
Target:  5'- cGUCG-GCGAGuuCCUAUggaAGCAACCCa -3'
miRNA:   3'- -CGGCgCGCUCu-GGGUAaa-UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 21632 0.72 0.857184
Target:  5'- gGCCgGCGCGGGccgcGCCCGggc-GCGACCg -3'
miRNA:   3'- -CGG-CGCGCUC----UGGGUaaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 124445 0.72 0.857184
Target:  5'- gGCCgGCGCGGGccgcGCCCGggc-GCGACCg -3'
miRNA:   3'- -CGG-CGCGCUC----UGGGUaaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 126277 0.72 0.857184
Target:  5'- cGUCG-GCGAGuuCCUAUggaAGCAACCCa -3'
miRNA:   3'- -CGGCgCGCUCu-GGGUAaa-UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 86954 0.72 0.857184
Target:  5'- cGCCGCGCGccccgaGCCCGUguu-CAcGCCCa -3'
miRNA:   3'- -CGGCGCGCuc----UGGGUAaauuGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 54413 0.72 0.865061
Target:  5'- cGCCGcCGCGGuuGGCCUc---GGCGGCCCg -3'
miRNA:   3'- -CGGC-GCGCU--CUGGGuaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 77577 0.72 0.865061
Target:  5'- gGCCGCGCGGGccgaGCUCGcacGGCGgcACCCg -3'
miRNA:   3'- -CGGCGCGCUC----UGGGUaaaUUGU--UGGG- -5'
6501 3' -51.1 NC_001847.1 + 53062 0.72 0.865061
Target:  5'- cCCGCGCuuGGCCCA---GACGccgaGCCCg -3'
miRNA:   3'- cGGCGCGcuCUGGGUaaaUUGU----UGGG- -5'
6501 3' -51.1 NC_001847.1 + 27912 0.72 0.865061
Target:  5'- gGCCGCGCuugcgGAGGCCag---GGCGGCCg -3'
miRNA:   3'- -CGGCGCG-----CUCUGGguaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 48760 0.72 0.865061
Target:  5'- aGCCGCGC---GCCCGccgccGCGGCCCg -3'
miRNA:   3'- -CGGCGCGcucUGGGUaaau-UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 105623 0.72 0.865061
Target:  5'- cGCCGCGCGGGcgaGCUCu----GCGGCCg -3'
miRNA:   3'- -CGGCGCGCUC---UGGGuaaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 38342 0.72 0.865061
Target:  5'- cGCUGCGCGccccccGACCCcagcuuCAGCCCc -3'
miRNA:   3'- -CGGCGCGCu-----CUGGGuaaauuGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.