miRNA display CGI


Results 81 - 100 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 18549 0.72 0.857184
Target:  5'- gGCCGUaguaGCGGGGCUCGgugacCGGCCCg -3'
miRNA:   3'- -CGGCG----CGCUCUGGGUaaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 18674 0.7 0.925287
Target:  5'- uGCagguaCGCGAGGCCCcgcagcACGGCCCg -3'
miRNA:   3'- -CGgc---GCGCUCUGGGuaaau-UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 18696 0.68 0.973228
Target:  5'- cGCCGCGCGuGcgccagcgcccaccGCCCucgagcccaagcgcGCGGCCCg -3'
miRNA:   3'- -CGGCGCGCuC--------------UGGGuaaau---------UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 19012 0.73 0.808364
Target:  5'- gGCCGCGCGccccAGcGCCCGgccgaaaggccgagaAGCAGCCCg -3'
miRNA:   3'- -CGGCGCGC----UC-UGGGUaaa------------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 19026 0.73 0.787006
Target:  5'- uUCGCGCGuGACCCcgccGGCAgGCCCg -3'
miRNA:   3'- cGGCGCGCuCUGGGuaaaUUGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 19279 0.67 0.98542
Target:  5'- gGCgGCGCGAccuccGGuCCCucguugUUGACGGCCa -3'
miRNA:   3'- -CGgCGCGCU-----CU-GGGua----AAUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 19473 0.67 0.979326
Target:  5'- cGCCGCGCGc--UCCAU--GGguGCCCa -3'
miRNA:   3'- -CGGCGCGCucuGGGUAaaUUguUGGG- -5'
6501 3' -51.1 NC_001847.1 + 19555 0.66 0.991289
Target:  5'- aGCCGCacGCGAucgacGCCCGcgaucgccGCGGCCCg -3'
miRNA:   3'- -CGGCG--CGCUc----UGGGUaaau----UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 19651 0.66 0.989634
Target:  5'- gGCCGCuuGCG-GGCCCGgccgccggaaacuGCGACCg -3'
miRNA:   3'- -CGGCG--CGCuCUGGGUaaau---------UGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 19857 0.66 0.988646
Target:  5'- cCCGCGCccgGGGGCgCCGgcu--UAGCCCg -3'
miRNA:   3'- cGGCGCG---CUCUG-GGUaaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 19944 0.72 0.865837
Target:  5'- gGCCGCGCGAGggcucGCCCuuccacauguggguuUUUGGCGccGCCg -3'
miRNA:   3'- -CGGCGCGCUC-----UGGGu--------------AAAUUGU--UGGg -5'
6501 3' -51.1 NC_001847.1 + 20086 0.67 0.979326
Target:  5'- cCCGCgGCGcGGCCCGgccaucGCuAGCCCg -3'
miRNA:   3'- cGGCG-CGCuCUGGGUaaau--UG-UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 21008 0.72 0.872715
Target:  5'- aCCGCGCGcGGCUgugcgGGCGACCCu -3'
miRNA:   3'- cGGCGCGCuCUGGguaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 21117 0.67 0.977174
Target:  5'- cGCCGgGCGugauGACCCcgaucgcgguCGACCUg -3'
miRNA:   3'- -CGGCgCGCu---CUGGGuaaauu----GUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 21526 0.69 0.94996
Target:  5'- gGCCGCGCG-GGCCaac---GC-GCCCa -3'
miRNA:   3'- -CGGCGCGCuCUGGguaaauUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 21632 0.72 0.857184
Target:  5'- gGCCgGCGCGGGccgcGCCCGggc-GCGACCg -3'
miRNA:   3'- -CGG-CGCGCUC----UGGGUaaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 21769 0.68 0.971518
Target:  5'- cGCCgGCGCcGGGCCCGgcgc-CGGCCg -3'
miRNA:   3'- -CGG-CGCGcUCUGGGUaaauuGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 21971 0.68 0.965256
Target:  5'- gGCCGCgGCGccGGuugccGCCCGcggucGACGACCCg -3'
miRNA:   3'- -CGGCG-CGC--UC-----UGGGUaaa--UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 22383 0.72 0.839099
Target:  5'- gGCCccCGCGGGGCCgGggucgcgacgGACAACCCg -3'
miRNA:   3'- -CGGc-GCGCUCUGGgUaaa-------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 22401 0.69 0.958084
Target:  5'- gGCCGCgGCGAGcguGCUCGUccgcgggGGCGggGCCCg -3'
miRNA:   3'- -CGGCG-CGCUC---UGGGUAaa-----UUGU--UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.