miRNA display CGI


Results 121 - 140 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 28456 0.72 0.849089
Target:  5'- cGCCGCGCGAcGGgCCGccgccgcugGAgGGCCCg -3'
miRNA:   3'- -CGGCGCGCU-CUgGGUaaa------UUgUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 28557 0.66 0.992414
Target:  5'- gGCgGCGCGGGcgacACCCGcgagggccucUggGACuGCCCc -3'
miRNA:   3'- -CGgCGCGCUC----UGGGU----------AaaUUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 28628 0.68 0.968498
Target:  5'- gGCgGcCGCGGGGCCC-----GCGGCCg -3'
miRNA:   3'- -CGgC-GCGCUCUGGGuaaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 29158 0.71 0.880139
Target:  5'- cGCCuGcCGCGAGGCgCuggaGGCGGCCCg -3'
miRNA:   3'- -CGG-C-GCGCUCUGgGuaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 29302 0.7 0.930729
Target:  5'- gGCCGC-CGAGcuGCUCGgc--GCGGCCCg -3'
miRNA:   3'- -CGGCGcGCUC--UGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 29329 0.66 0.991289
Target:  5'- aGCCgcgaGCGCGAGugCgCG---GGCGGCCg -3'
miRNA:   3'- -CGG----CGCGCUCugG-GUaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 29341 0.69 0.940849
Target:  5'- -gCGCGCGcGGCuCCAgcgcGCGGCCCc -3'
miRNA:   3'- cgGCGCGCuCUG-GGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 29392 0.66 0.987111
Target:  5'- cGCCGCGCugGAGGCggCCGcgcUGGCGGCgCg -3'
miRNA:   3'- -CGGCGCG--CUCUG--GGUaa-AUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 29392 0.74 0.766816
Target:  5'- uGCCgcGCGCGAGGCCCuccUAACcugguuuGACCUg -3'
miRNA:   3'- -CGG--CGCGCUCUGGGuaaAUUG-------UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 29456 0.72 0.872715
Target:  5'- cGCgGCGCGGcGGCCCGcgcguCGGCCUg -3'
miRNA:   3'- -CGgCGCGCU-CUGGGUaaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 29584 0.77 0.591733
Target:  5'- uGCCGUcuuGCGAGACCCGgccuuuGCGcCCCa -3'
miRNA:   3'- -CGGCG---CGCUCUGGGUaaau--UGUuGGG- -5'
6501 3' -51.1 NC_001847.1 + 29646 0.71 0.887327
Target:  5'- cGCCGCGgGcGGACCCGgagGACGGgUCc -3'
miRNA:   3'- -CGGCGCgC-UCUGGGUaaaUUGUUgGG- -5'
6501 3' -51.1 NC_001847.1 + 29914 0.69 0.940849
Target:  5'- cGCCGCGgGGGGCCCcucgggGGaggaGACUCu -3'
miRNA:   3'- -CGGCGCgCUCUGGGuaaa--UUg---UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 30020 0.77 0.612805
Target:  5'- cCCGCGUgcuGGGGCCCAUgccgcccGGCGGCCCc -3'
miRNA:   3'- cGGCGCG---CUCUGGGUAaa-----UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 30073 0.71 0.894275
Target:  5'- cGCCGCGUGccGCCCGgg-GACuaccacacGCCCg -3'
miRNA:   3'- -CGGCGCGCucUGGGUaaaUUGu-------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 30222 0.66 0.988646
Target:  5'- aGCCGCGCGcgcccGGGCCgAggUGcGCGugUCg -3'
miRNA:   3'- -CGGCGCGC-----UCUGGgUaaAU-UGUugGG- -5'
6501 3' -51.1 NC_001847.1 + 30244 0.76 0.665606
Target:  5'- cGCCGCGCGGGcCCCGcggGGCGcucGCCg -3'
miRNA:   3'- -CGGCGCGCUCuGGGUaaaUUGU---UGGg -5'
6501 3' -51.1 NC_001847.1 + 30377 0.66 0.987111
Target:  5'- cGCCGCccgGCGAGgacgaGCgCCG----GCGGCCCg -3'
miRNA:   3'- -CGGCG---CGCUC-----UG-GGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 30665 0.76 0.676117
Target:  5'- gGCCGCGCGAcGGCCCGgccgucgGGCAggcgcacguguACCUg -3'
miRNA:   3'- -CGGCGCGCU-CUGGGUaaa----UUGU-----------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 30737 0.75 0.697012
Target:  5'- cGCCGCGCGcuGGCCCG---AGCGGCgCg -3'
miRNA:   3'- -CGGCGCGCu-CUGGGUaaaUUGUUGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.