miRNA display CGI


Results 141 - 160 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 30938 0.66 0.991289
Target:  5'- cCCGCGCGAGuACC-----GGCAGCgCg -3'
miRNA:   3'- cGGCGCGCUC-UGGguaaaUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 31092 0.68 0.971518
Target:  5'- cGCgGCGCuGGGGCCgGgcagcgcggUGGCAugCCu -3'
miRNA:   3'- -CGgCGCG-CUCUGGgUaa-------AUUGUugGG- -5'
6501 3' -51.1 NC_001847.1 + 31154 0.68 0.971518
Target:  5'- gGCCGCgGCGGuGGCCUucUgcGCGGCCg -3'
miRNA:   3'- -CGGCG-CGCU-CUGGGuaAauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 31402 0.7 0.924729
Target:  5'- -gCGCGCGAauucgugGACgCCGUcUGGCAGCCg -3'
miRNA:   3'- cgGCGCGCU-------CUG-GGUAaAUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 31744 0.67 0.979326
Target:  5'- gGCCGCG-GAGGgCCAg-----GACCCg -3'
miRNA:   3'- -CGGCGCgCUCUgGGUaaauugUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 31819 0.68 0.974325
Target:  5'- gGCgGCGCGGGGgCagaGUgcGAgGACCCu -3'
miRNA:   3'- -CGgCGCGCUCUgGg--UAaaUUgUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 31960 0.72 0.840785
Target:  5'- uGCCGCgGCGgcggcGGGCCCcgUgGACGccGCCCu -3'
miRNA:   3'- -CGGCG-CGC-----UCUGGGuaAaUUGU--UGGG- -5'
6501 3' -51.1 NC_001847.1 + 31966 0.68 0.961787
Target:  5'- cGgCGCGCGGGGcgggcCCCGg--GGCGcgaaGCCCg -3'
miRNA:   3'- -CgGCGCGCUCU-----GGGUaaaUUGU----UGGG- -5'
6501 3' -51.1 NC_001847.1 + 31998 0.71 0.892905
Target:  5'- aGCCGCGa-GGACCUucgcgcgccGGCGGCCCg -3'
miRNA:   3'- -CGGCGCgcUCUGGGuaaa-----UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 32052 0.72 0.840785
Target:  5'- cCCGCGCG-GGCUCG----GCGGCCCc -3'
miRNA:   3'- cGGCGCGCuCUGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 32092 0.73 0.805627
Target:  5'- cGCCgggcgucgggGCGCGAGGCCCGggcucgGGCCCc -3'
miRNA:   3'- -CGG----------CGCGCUCUGGGUaaauugUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 32221 0.72 0.856384
Target:  5'- gGCCgggGCGCGgggcgccGGACCCAgg-GGCGgaGCCCa -3'
miRNA:   3'- -CGG---CGCGC-------UCUGGGUaaaUUGU--UGGG- -5'
6501 3' -51.1 NC_001847.1 + 32312 0.71 0.887327
Target:  5'- cGCCGCGgaaCGGGACCCGcuggAACAcgcgaucgcggGCCUg -3'
miRNA:   3'- -CGGCGC---GCUCUGGGUaaa-UUGU-----------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 32676 0.66 0.986454
Target:  5'- gGCgGCGCG-GGCCCGcucgagcuguGCGGCgCCg -3'
miRNA:   3'- -CGgCGCGCuCUGGGUaaau------UGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 32829 0.8 0.469827
Target:  5'- -gCGCGCGAGGCCCGcgUGGCcGCCg -3'
miRNA:   3'- cgGCGCGCUCUGGGUaaAUUGuUGGg -5'
6501 3' -51.1 NC_001847.1 + 32903 0.78 0.5295
Target:  5'- cGCCGCGCGcgagcgccuGGACgCCGUcccgccGACGACCCg -3'
miRNA:   3'- -CGGCGCGC---------UCUG-GGUAaa----UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 32944 0.68 0.961787
Target:  5'- -gCGCGCGGuGCCCGcg-GACAGCgCg -3'
miRNA:   3'- cgGCGCGCUcUGGGUaaaUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 33013 0.66 0.988646
Target:  5'- gGUCGCGCgGAGugCC-----GCcGCCCu -3'
miRNA:   3'- -CGGCGCG-CUCugGGuaaauUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 33066 0.7 0.930729
Target:  5'- gGUCGCGCGcGGCCCGcgccu--GCCCu -3'
miRNA:   3'- -CGGCGCGCuCUGGGUaaauuguUGGG- -5'
6501 3' -51.1 NC_001847.1 + 33580 0.66 0.988646
Target:  5'- gGCCGUGCGcGGugCCGac-GACGuCCUg -3'
miRNA:   3'- -CGGCGCGC-UCugGGUaaaUUGUuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.