miRNA display CGI


Results 81 - 100 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 118481 0.68 0.968498
Target:  5'- gGCUGCGCGAcgcGCCCgcgccgccacGUUcgccaagAGCAACCCc -3'
miRNA:   3'- -CGGCGCGCUc--UGGG----------UAAa------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 118247 0.73 0.823577
Target:  5'- cCCGCGCGAGACC-----GGCGACgCa -3'
miRNA:   3'- cGGCGCGCUCUGGguaaaUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 117525 0.67 0.98337
Target:  5'- -aCGCGCGGcGACgacgaggCCGUgc-GCAACCCc -3'
miRNA:   3'- cgGCGCGCU-CUG-------GGUAaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 117399 0.67 0.979326
Target:  5'- uGCgaGCGCGAGGCCg---UGGCcGCCUc -3'
miRNA:   3'- -CGg-CGCGCUCUGGguaaAUUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 117352 0.71 0.907434
Target:  5'- cGCC-CGCuGGGGCCCGUccugaaccUAGCGGCCUc -3'
miRNA:   3'- -CGGcGCG-CUCUGGGUAa-------AUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 117312 0.66 0.988646
Target:  5'- aGCCGCGaUGGgcGACCUAgcggcggggGGCGGCCUc -3'
miRNA:   3'- -CGGCGC-GCU--CUGGGUaaa------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 117262 0.67 0.979326
Target:  5'- cGCCGCcCGccccGCCCGaggacgGGCGACCCg -3'
miRNA:   3'- -CGGCGcGCuc--UGGGUaaa---UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 116961 0.7 0.925287
Target:  5'- cGCCGCGCGuccgccauGGGCCCGcuggGGCGAgCg -3'
miRNA:   3'- -CGGCGCGC--------UCUGGGUaaa-UUGUUgGg -5'
6501 3' -51.1 NC_001847.1 + 116921 0.73 0.81469
Target:  5'- aGCaCGCGcCGAGAgCCGc---ACAGCCCg -3'
miRNA:   3'- -CG-GCGC-GCUCUgGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 116827 0.66 0.986949
Target:  5'- aGCCGCGCGugugcucaaucccGGACCacgaaAGCAcaaaacggacGCCCu -3'
miRNA:   3'- -CGGCGCGC-------------UCUGGguaaaUUGU----------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 116729 0.66 0.991289
Target:  5'- cCCGCGCGcg--CUGUUcGACAGCCCc -3'
miRNA:   3'- cGGCGCGCucugGGUAAaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 116316 0.66 0.987111
Target:  5'- gGCgCGCGCGAgGACgCCGU------GCCCa -3'
miRNA:   3'- -CG-GCGCGCU-CUG-GGUAaauuguUGGG- -5'
6501 3' -51.1 NC_001847.1 + 116278 0.67 0.979326
Target:  5'- cGCCGCucgGCGAGGCagCGUgccccGCuGACCCg -3'
miRNA:   3'- -CGGCG---CGCUCUGg-GUAaau--UG-UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 116139 0.67 0.98542
Target:  5'- cGCUgggGCGCGcGGCCCGaggcgcUGGCGGCCg -3'
miRNA:   3'- -CGG---CGCGCuCUGGGUaa----AUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 116133 0.66 0.987111
Target:  5'- -aCGCGCGAagaGGCCgAg--GGCGccGCCCg -3'
miRNA:   3'- cgGCGCGCU---CUGGgUaaaUUGU--UGGG- -5'
6501 3' -51.1 NC_001847.1 + 115841 0.69 0.94996
Target:  5'- gGCCGCgGCcgcGCUCGUUUGuugGCGGCCCg -3'
miRNA:   3'- -CGGCG-CGcucUGGGUAAAU---UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 115798 0.75 0.728913
Target:  5'- gGCgCGCGCaAGACCCGgccgcggcgcuugcgUUAACAGCCa -3'
miRNA:   3'- -CG-GCGCGcUCUGGGUa--------------AAUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 115687 0.73 0.823577
Target:  5'- gGCUGCgcggggGCGAGAgCCGgcu-GCGGCCCg -3'
miRNA:   3'- -CGGCG------CGCUCUgGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 115634 0.69 0.945529
Target:  5'- uGCCGCaaGCGcGAuCCCGcgacACGACCCg -3'
miRNA:   3'- -CGGCG--CGCuCU-GGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 115514 0.68 0.973228
Target:  5'- gGCCGCGCGccGACgCCGgcgccccgGGCCCg -3'
miRNA:   3'- -CGGCGCGCu-CUG-GGUaaauug--UUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.