miRNA display CGI


Results 101 - 120 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 114391 0.66 0.990036
Target:  5'- cGCCGacgaagGCGAGGCCCGccucACcGCCg -3'
miRNA:   3'- -CGGCg-----CGCUCUGGGUaaauUGuUGGg -5'
6501 3' -51.1 NC_001847.1 + 114343 0.66 0.990804
Target:  5'- cGCCGC-CGaAGcACCCGccgcgaugcuGCAGCCCc -3'
miRNA:   3'- -CGGCGcGC-UC-UGGGUaaau------UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 114291 0.73 0.823577
Target:  5'- cGCCGCaGCGcAGACUCGcUUuGCGACCg -3'
miRNA:   3'- -CGGCG-CGC-UCUGGGUaAAuUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 114147 0.73 0.82093
Target:  5'- aGCCGCGCgcggugccgauuggGAGGCCUAgu--GCGcgcGCCCg -3'
miRNA:   3'- -CGGCGCG--------------CUCUGGGUaaauUGU---UGGG- -5'
6501 3' -51.1 NC_001847.1 + 113764 0.66 0.992414
Target:  5'- cGUCGC-UGAGAgCCGcccgaGGCGGCCCg -3'
miRNA:   3'- -CGGCGcGCUCUgGGUaaa--UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 113616 0.68 0.965256
Target:  5'- aGCUuggGCGCGuuGGCCCGc---GCGGCCCc -3'
miRNA:   3'- -CGG---CGCGCu-CUGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 113540 0.67 0.980893
Target:  5'- cGCCGCcaGCGAGuuuaggggggcgggGCCCc----GCGGCCCc -3'
miRNA:   3'- -CGGCG--CGCUC--------------UGGGuaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 113405 0.67 0.98542
Target:  5'- cCCGCGCGcgcGGGCCgGcgc--CGGCCCg -3'
miRNA:   3'- cGGCGCGC---UCUGGgUaaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 113374 0.66 0.987111
Target:  5'- gGCCGUacGUGAGcCCCA----GCGACgCCa -3'
miRNA:   3'- -CGGCG--CGCUCuGGGUaaauUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 113374 0.76 0.655067
Target:  5'- gGCCgGCGCcGGGCCCGgcgccGGCGGCCCc -3'
miRNA:   3'- -CGG-CGCGcUCUGGGUaaa--UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 113029 0.76 0.644509
Target:  5'- cGCCGCGCGucugGGACgCCGgc-AGCAGCCg -3'
miRNA:   3'- -CGGCGCGC----UCUG-GGUaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 113017 0.76 0.676117
Target:  5'- cGCCGcCGCcGGGCCCAg--GGCGcGCCCg -3'
miRNA:   3'- -CGGC-GCGcUCUGGGUaaaUUGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 112051 0.74 0.766816
Target:  5'- gGCgCGCGCGGGcuacguagagggcGCCCuc--GGCGACCCg -3'
miRNA:   3'- -CG-GCGCGCUC-------------UGGGuaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 111892 0.66 0.988646
Target:  5'- gGCCGC-CGAuGACCUcgUgaacguCAACCUc -3'
miRNA:   3'- -CGGCGcGCU-CUGGGuaAauu---GUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 111673 0.67 0.980233
Target:  5'- cGCCgaGCGCGAuGGCCgAggcggcggacgcGGCGACCCu -3'
miRNA:   3'- -CGG--CGCGCU-CUGGgUaaa---------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 111304 0.7 0.930729
Target:  5'- gGCCGgggGCGGGGCCCcuuacGugGGCCCc -3'
miRNA:   3'- -CGGCg--CGCUCUGGGuaaa-UugUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 111294 0.67 0.976925
Target:  5'- -aCGCGCGAGGCCagc----CGGCUCg -3'
miRNA:   3'- cgGCGCGCUCUGGguaaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 110631 0.68 0.968498
Target:  5'- -gCGCGCGAGcCCCG----AC-GCCCa -3'
miRNA:   3'- cgGCGCGCUCuGGGUaaauUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 109948 0.66 0.987111
Target:  5'- gGCCGCGCGcgGGGCUCGcuggcCAGCUg -3'
miRNA:   3'- -CGGCGCGC--UCUGGGUaaauuGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 108761 0.77 0.612805
Target:  5'- uGCCGCGCuGGGCgCCGgacgcgccgGGCGGCCCa -3'
miRNA:   3'- -CGGCGCGcUCUG-GGUaaa------UUGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.