miRNA display CGI


Results 121 - 140 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 108700 0.67 0.98542
Target:  5'- aGCCGCGCG--GCCUAcc--GCuGCCCc -3'
miRNA:   3'- -CGGCGCGCucUGGGUaaauUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 108642 0.67 0.979326
Target:  5'- cCCGCGCccggcAGGCCCGccuuGCAccagGCCCg -3'
miRNA:   3'- cGGCGCGc----UCUGGGUaaauUGU----UGGG- -5'
6501 3' -51.1 NC_001847.1 + 108393 0.71 0.900979
Target:  5'- gGCCGCGC---ACCCGcgcucuACGGCCCa -3'
miRNA:   3'- -CGGCGCGcucUGGGUaaau--UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 108257 0.66 0.992414
Target:  5'- cCUGCGUGuuGCCCGacggcggUGGCGGCCg -3'
miRNA:   3'- cGGCGCGCucUGGGUaa-----AUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 108176 0.68 0.961787
Target:  5'- cGCUGCGCGcGcACCuCAUUUccaacuccGGCGACCg -3'
miRNA:   3'- -CGGCGCGCuC-UGG-GUAAA--------UUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 107713 0.68 0.971518
Target:  5'- cGCuCGCggGCGGGcACCCcggggcuACAACCCu -3'
miRNA:   3'- -CG-GCG--CGCUC-UGGGuaaau--UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 107451 0.66 0.988646
Target:  5'- cGCCGCGUGcgccGGCgCUAUaaaGGCAGCUCg -3'
miRNA:   3'- -CGGCGCGCu---CUG-GGUAaa-UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 107370 0.67 0.983565
Target:  5'- cGCCGCGC-AGuuuauuguacGCCCcgc--ACAGCCCc -3'
miRNA:   3'- -CGGCGCGcUC----------UGGGuaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 107328 0.67 0.979095
Target:  5'- aGCCGCGCGugcgccgGGGCgCGaaUGGCcagAGCCCg -3'
miRNA:   3'- -CGGCGCGC-------UCUGgGUaaAUUG---UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 107148 0.72 0.832278
Target:  5'- cGCCGCGCGcugcagcgcGGCCCAgc--GCGGCgCCa -3'
miRNA:   3'- -CGGCGCGCu--------CUGGGUaaauUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 107048 0.69 0.954144
Target:  5'- uGUCGCGCGcGGCCCcg--GGCAggcGCCa -3'
miRNA:   3'- -CGGCGCGCuCUGGGuaaaUUGU---UGGg -5'
6501 3' -51.1 NC_001847.1 + 106774 0.69 0.953736
Target:  5'- cGCCgucuccgGCGCGAGggcgccggggGCCCGggcgcGCGGCCCc -3'
miRNA:   3'- -CGG-------CGCGCUC----------UGGGUaaau-UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 106722 0.72 0.832278
Target:  5'- aGCCaGCGCGGGcGCCgGUUgcGC-GCCCg -3'
miRNA:   3'- -CGG-CGCGCUC-UGGgUAAauUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 106678 0.66 0.987111
Target:  5'- cGCgGCGCGucGugCCAc--GGCGGCCa -3'
miRNA:   3'- -CGgCGCGCu-CugGGUaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 106297 0.69 0.94996
Target:  5'- cGUCGCGCGcgcGGCCgcgCGUUcUAGCAGCCg -3'
miRNA:   3'- -CGGCGCGCu--CUGG---GUAA-AUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 105871 0.66 0.990927
Target:  5'- cGCCGCGCGAaucgccgccacguaG-UCCGUgc-GCGGCCg -3'
miRNA:   3'- -CGGCGCGCU--------------CuGGGUAaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 105841 0.73 0.796395
Target:  5'- gGCCGCGcCGAGcaGCUCG----GCGGCCCg -3'
miRNA:   3'- -CGGCGC-GCUC--UGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 105623 0.72 0.865061
Target:  5'- cGCCGCGCGGGcgaGCUCu----GCGGCCg -3'
miRNA:   3'- -CGGCGCGCUC---UGGGuaaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 105365 0.67 0.981537
Target:  5'- cGCCGC-CG-GGCCgG---GGCGGCCCu -3'
miRNA:   3'- -CGGCGcGCuCUGGgUaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 104901 0.71 0.887327
Target:  5'- cGCCcCGCGGGGCCCGcgcggcGGCGGgCCg -3'
miRNA:   3'- -CGGcGCGCUCUGGGUaaa---UUGUUgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.