miRNA display CGI


Results 141 - 160 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 104803 0.68 0.968498
Target:  5'- -aCGCGCGGuGCUCGUcgucCAGCCCg -3'
miRNA:   3'- cgGCGCGCUcUGGGUAaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 104761 0.66 0.987111
Target:  5'- gGCCGC-CGGcGCUCGUccucgccgGGCGGCCCg -3'
miRNA:   3'- -CGGCGcGCUcUGGGUAaa------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 104722 0.68 0.968498
Target:  5'- aGCgCGUGCGAGAgCCCGccgcggcgcGGCGGCCa -3'
miRNA:   3'- -CG-GCGCGCUCU-GGGUaaa------UUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 104664 0.68 0.970336
Target:  5'- gGCCGCGcCGAucgcGuCCCAgcgcugcagaaAGCGGCCCa -3'
miRNA:   3'- -CGGCGC-GCU----CuGGGUaaa--------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 104602 0.66 0.988646
Target:  5'- aGCCGCGCGAcGAgCUCGgc-GACGucgcGCUCg -3'
miRNA:   3'- -CGGCGCGCU-CU-GGGUaaaUUGU----UGGG- -5'
6501 3' -51.1 NC_001847.1 + 104537 0.67 0.976925
Target:  5'- cGCUGCGCGGcGGCCCcgg-GGCcGCUa -3'
miRNA:   3'- -CGGCGCGCU-CUGGGuaaaUUGuUGGg -5'
6501 3' -51.1 NC_001847.1 + 104326 0.66 0.9885
Target:  5'- aGCCGCGCGuaggcGGCCuCGgcgcGCGcgaaggcGCCCg -3'
miRNA:   3'- -CGGCGCGCu----CUGG-GUaaauUGU-------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 104241 0.68 0.968498
Target:  5'- cGCgGUGCGcGGGCCCAggcgcgUGGCcACCg -3'
miRNA:   3'- -CGgCGCGC-UCUGGGUaa----AUUGuUGGg -5'
6501 3' -51.1 NC_001847.1 + 103986 0.67 0.981537
Target:  5'- gGCCGCGCaGaAGGCCaccgccGCGGCCg -3'
miRNA:   3'- -CGGCGCG-C-UCUGGguaaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 103432 0.66 0.992414
Target:  5'- aGCgGCGCGcGGCCCGc---GCcuCCCc -3'
miRNA:   3'- -CGgCGCGCuCUGGGUaaauUGuuGGG- -5'
6501 3' -51.1 NC_001847.1 + 103265 0.66 0.988646
Target:  5'- uCCGCGCGAcgGGCuCCGccggcAGCAACgCCg -3'
miRNA:   3'- cGGCGCGCU--CUG-GGUaaa--UUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 103224 0.75 0.727895
Target:  5'- cGCCGCGCGAG-CCgCGgcc-GCGGCCg -3'
miRNA:   3'- -CGGCGCGCUCuGG-GUaaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 103197 0.69 0.954144
Target:  5'- cGCCGCGCGccGGACCgCGcuc--CGACCg -3'
miRNA:   3'- -CGGCGCGC--UCUGG-GUaaauuGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 103106 0.67 0.98542
Target:  5'- cCCGCGCG-GGCgCCGUccccGCGcCCCg -3'
miRNA:   3'- cGGCGCGCuCUG-GGUAaau-UGUuGGG- -5'
6501 3' -51.1 NC_001847.1 + 102826 0.84 0.293228
Target:  5'- cGCCGCGCG-GGCCCccu--GCGACCCc -3'
miRNA:   3'- -CGGCGCGCuCUGGGuaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 102144 0.66 0.992414
Target:  5'- uCCGCGCGA--CCaCGgcggcGCGGCCCg -3'
miRNA:   3'- cGGCGCGCUcuGG-GUaaau-UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 102088 0.74 0.756009
Target:  5'- gGCCGCGCGcGACCCGgucaauaAACUCc -3'
miRNA:   3'- -CGGCGCGCuCUGGGUaaauug-UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 102027 0.68 0.961787
Target:  5'- cGCCGCagguaCGGGGCCCc-----CGGCCCa -3'
miRNA:   3'- -CGGCGc----GCUCUGGGuaaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 101713 0.72 0.832278
Target:  5'- cCCGCGacgcCGAGcGCCCGUUUAugGCGGCCa -3'
miRNA:   3'- cGGCGC----GCUC-UGGGUAAAU--UGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 101466 0.68 0.971518
Target:  5'- cGCCGCGCGGccgcaagggcGGCgCGc-UAGCGACCg -3'
miRNA:   3'- -CGGCGCGCU----------CUGgGUaaAUUGUUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.