miRNA display CGI


Results 161 - 180 of 662 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 101379 0.67 0.979326
Target:  5'- cGCCGCGgGGGcuGCCC-----GCGGCgCCg -3'
miRNA:   3'- -CGGCGCgCUC--UGGGuaaauUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 101357 0.72 0.857184
Target:  5'- cGCCGCGCGcAGcCCCGcga---AGCCCu -3'
miRNA:   3'- -CGGCGCGC-UCuGGGUaaauugUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 101217 0.67 0.976925
Target:  5'- gGCCuGCacacgGgGAGGCCCAgccuccccgAGCAGCCUg -3'
miRNA:   3'- -CGG-CG-----CgCUCUGGGUaaa------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 101150 0.67 0.981537
Target:  5'- cGCCGCGaaggcuGGGCCCAgcccggccAGCGcGCCCg -3'
miRNA:   3'- -CGGCGCgc----UCUGGGUaaa-----UUGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 101104 0.74 0.74806
Target:  5'- cGCgCGcCGCGGGGCCCAUcgccuGGCCCa -3'
miRNA:   3'- -CG-GC-GCGCUCUGGGUAaauugUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 101051 0.74 0.757985
Target:  5'- cGCCGCGCGAG-CCac---GGCGGCCg -3'
miRNA:   3'- -CGGCGCGCUCuGGguaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 101028 0.71 0.880139
Target:  5'- cGCCGCGgcCGGGGuCCCAaUUuGCGcACCCg -3'
miRNA:   3'- -CGGCGC--GCUCU-GGGUaAAuUGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 100758 0.66 0.988646
Target:  5'- uGCCGCgGCGGcGGCCgCcgUUGuuuCGGCCg -3'
miRNA:   3'- -CGGCG-CGCU-CUGG-GuaAAUu--GUUGGg -5'
6501 3' -51.1 NC_001847.1 + 100688 0.69 0.949528
Target:  5'- cGCCGCcgGCGGccaccgcGGCCUcgUccGCGGCCCg -3'
miRNA:   3'- -CGGCG--CGCU-------CUGGGuaAauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 100590 0.66 0.988646
Target:  5'- cGCCGCuGCaGcGGCCg----AGCAGCCCg -3'
miRNA:   3'- -CGGCG-CG-CuCUGGguaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 100367 0.71 0.894275
Target:  5'- aGCCGCGCGccgcGGCCgCGgcgcGCAGCCg -3'
miRNA:   3'- -CGGCGCGCu---CUGG-GUaaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 99975 0.7 0.923605
Target:  5'- gGCCGCGUGcccccggcgguagaAGGCCaCGUacUUGGCGAgCCg -3'
miRNA:   3'- -CGGCGCGC--------------UCUGG-GUA--AAUUGUUgGG- -5'
6501 3' -51.1 NC_001847.1 + 99738 0.75 0.697012
Target:  5'- cGCUGCGCGGGugCg--UUGGcCGGCCCg -3'
miRNA:   3'- -CGGCGCGCUCugGguaAAUU-GUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 99534 0.68 0.971518
Target:  5'- cGCCGCGCGcu-UUCGUUUGcgauguaccGCAGCCUu -3'
miRNA:   3'- -CGGCGCGCucuGGGUAAAU---------UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 99470 0.69 0.955749
Target:  5'- cGCCGCuCGGGGCCaagaucagcGCGAUCCg -3'
miRNA:   3'- -CGGCGcGCUCUGGguaaau---UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 99352 0.73 0.796395
Target:  5'- gGCCGgGCGGaucuuGGCCCcu---GCGACCCa -3'
miRNA:   3'- -CGGCgCGCU-----CUGGGuaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 99259 0.69 0.958084
Target:  5'- aGCCgGCGCGGGAguaUAUUUGcgcCGGCCCa -3'
miRNA:   3'- -CGG-CGCGCUCUgg-GUAAAUu--GUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 99175 0.7 0.91959
Target:  5'- aGCCG-GCGGGAgCCAc--AGCAGCgCCg -3'
miRNA:   3'- -CGGCgCGCUCUgGGUaaaUUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 99107 0.75 0.686589
Target:  5'- aGCCGCGCGuAGugCUcgUccgcgcGCAGCCCc -3'
miRNA:   3'- -CGGCGCGC-UCugGGuaAau----UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 98767 0.66 0.990036
Target:  5'- cGgCGCGCGcuGCCCGggccgcGGCGGCgCCg -3'
miRNA:   3'- -CgGCGCGCucUGGGUaaa---UUGUUG-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.