Results 61 - 80 of 662 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 89920 | 0.76 | 0.655067 |
Target: 5'- uGCCGCGCGAGGCCgCGcucgcGGCGGCgCu -3' miRNA: 3'- -CGGCGCGCUCUGG-GUaaa--UUGUUGgG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 122155 | 0.76 | 0.655067 |
Target: 5'- cGCCGCGCGGGACgaggagagggaaCCAgc-GACcgGGCCCa -3' miRNA: 3'- -CGGCGCGCUCUG------------GGUaaaUUG--UUGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 50074 | 0.74 | 0.74806 |
Target: 5'- cGCgGCGCG-GACCCGggc-GCGGCCa -3' miRNA: 3'- -CGgCGCGCuCUGGGUaaauUGUUGGg -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 102088 | 0.74 | 0.756009 |
Target: 5'- gGCCGCGCGcGACCCGgucaauaAACUCc -3' miRNA: 3'- -CGGCGCGCuCUGGGUaaauug-UUGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 79272 | 0.74 | 0.756997 |
Target: 5'- gGCCGCGCGgcgaagcGGugCCGgugAACGGCgCCg -3' miRNA: 3'- -CGGCGCGC-------UCugGGUaaaUUGUUG-GG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 29392 | 0.74 | 0.766816 |
Target: 5'- uGCCgcGCGCGAGGCCCuccUAACcugguuuGACCUg -3' miRNA: 3'- -CGG--CGCGCUCUGGGuaaAUUG-------UUGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 49607 | 0.74 | 0.777467 |
Target: 5'- uGCCgcgcaguagGCGCGAGuCCCGa--AACGGCCCu -3' miRNA: 3'- -CGG---------CGCGCUCuGGGUaaaUUGUUGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 66188 | 0.74 | 0.778428 |
Target: 5'- gGCCGCGCuGGACgCCuggcuggaggcGCAGCCCg -3' miRNA: 3'- -CGGCGCGcUCUG-GGuaaau------UGUUGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 132727 | 0.73 | 0.783208 |
Target: 5'- cGCCGCG-GGGGCCCcucgggggagGACGACUCu -3' miRNA: 3'- -CGGCGCgCUCUGGGuaaa------UUGUUGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 15050 | 0.73 | 0.787006 |
Target: 5'- aGCUGUGCGAG-CgCCAUcUGaccgGCGGCCCg -3' miRNA: 3'- -CGGCGCGCUCuG-GGUAaAU----UGUUGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 120085 | 0.74 | 0.745061 |
Target: 5'- aGCCGCGCGGGgcgggagauaaagcGCCCGcgcgucGGCGACUCa -3' miRNA: 3'- -CGGCGCGCUC--------------UGGGUaaa---UUGUUGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 83760 | 0.75 | 0.717676 |
Target: 5'- cGCCaCGUGGGACaCCGgcgaGGCAGCCCu -3' miRNA: 3'- -CGGcGCGCUCUG-GGUaaa-UUGUUGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 121413 | 0.76 | 0.665606 |
Target: 5'- aGCUGCGUGgagggcGGAgCCGUUgAGCGGCCCg -3' miRNA: 3'- -CGGCGCGC------UCUgGGUAAaUUGUUGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 59134 | 0.76 | 0.665606 |
Target: 5'- gGCCGCGCGGGugguCCCAguugUAcCGGCgCCg -3' miRNA: 3'- -CGGCGCGCUCu---GGGUaa--AUuGUUG-GG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 133057 | 0.76 | 0.665606 |
Target: 5'- cGCCGCGCGGGcCCCGcggGGCGcucGCCg -3' miRNA: 3'- -CGGCGCGCUCuGGGUaaaUUGU---UGGg -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 113017 | 0.76 | 0.676117 |
Target: 5'- cGCCGcCGCcGGGCCCAg--GGCGcGCCCg -3' miRNA: 3'- -CGGC-GCGcUCUGGGUaaaUUGU-UGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 133478 | 0.76 | 0.676117 |
Target: 5'- gGCCGCGCGAcGGCCCGgccgucgGGCAggcgcacguguACCUg -3' miRNA: 3'- -CGGCGCGCU-CUGGGUaaa----UUGU-----------UGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 99738 | 0.75 | 0.697012 |
Target: 5'- cGCUGCGCGGGugCg--UUGGcCGGCCCg -3' miRNA: 3'- -CGGCGCGCUCugGguaAAUU-GUUGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 127004 | 0.75 | 0.697012 |
Target: 5'- aGCCcCGCGAGGCUCGU----CGGCCCg -3' miRNA: 3'- -CGGcGCGCUCUGGGUAaauuGUUGGG- -5' |
|||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 133550 | 0.75 | 0.697012 |
Target: 5'- cGCCGCGCGcuGGCCCG---AGCGGCgCg -3' miRNA: 3'- -CGGCGCGCu-CUGGGUaaaUUGUUGgG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home